PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g05350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 301aa    MW: 34017.9 Da    PI: 9.8384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g05350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-1894141148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W+++Ed++l+d+++ +G g+W++I++  g++R++k+c++rw++yl
  Vradi06g05350.1  94 KGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYL 141
                      79********************************************97 PP
2Myb_DNA-binding48.42.2e-15148191247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Vradi06g05350.1 148 GIFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 191
                      66779****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-2485143IPR009057Homeodomain-like
PROSITE profilePS5129426.65589145IPR017930Myb domain
SuperFamilySSF466891.21E-2891188IPR009057Homeodomain-like
SMARTSM007172.4E-1593143IPR001005SANT/Myb domain
PfamPF002491.7E-1694141IPR001005SANT/Myb domain
CDDcd001676.67E-1296141No hitNo description
Gene3DG3DSA:1.10.10.601.8E-24144197IPR009057Homeodomain-like
PROSITE profilePS5129420.514146196IPR017930Myb domain
SMARTSM007172.4E-14146194IPR001005SANT/Myb domain
PfamPF002498.7E-14150191IPR001005SANT/Myb domain
CDDcd001678.58E-11152192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MHALNLSYHQ NIKIQTKLSY INHSSPPPTT QQNHQSKSTL FILSPLQIYI HLPSLLPFVR  60
ASIPSFSLSH HNLKDFTKKQ TMRKPCCDKE NINKGAWSKQ EDQKLIDYIR VHGEGCWRSI  120
PKAAGLHRCG KSCRLRWLNY LRPDIKRGIF AEDEEDLIIK LHALLGNRWS LIAGRLPGRT  180
DNEVKNYWNS HIRRKLIKMG IDPNNHKPHQ SFSRPHASSA EAASTSESMN NKVPVFKSPL  240
AATHHRISFT EQESAIISSP SLNLDLTIAL PSSLIGALED KPVQNSESTN TLDMEIDLNC  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-289219625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g05350.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504153.20.0myb-related protein 308
SwissprotQ9SZP11e-75MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A1S3UDP90.0A0A1S3UDP9_VIGRR; myb-related protein 308
STRINGXP_007141884.11e-130(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-76myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]