PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g13000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 375aa MW: 41590 Da PI: 8.1064 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.2 | 5.7e-31 | 142 | 195 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv++v+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Vradi05g13000.1 142 PRMRWTTTLHAHFVHVVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 195 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.81E-15 | 139 | 196 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 139 | 196 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-22 | 142 | 195 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.5E-7 | 143 | 194 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MCTTPHAVMP TFAPLPEPDL SLNISPPFTS DPDAKQLETS CSGFTLTTKT LYTDLCSTSD 60 SGSSGSDLSH ENGFRHIVYN LGHREPTLSL GSGRESLNPY PIQGAVSRNF NHLHNYQPQT 120 NTVDFKRNAR GIQGVKRSSR APRMRWTTTL HAHFVHVVQL LGGHERATPK SVLELMNVKD 180 LTLAHVKSHL QMYRTVKSSD KSSAGSWMFP LKDPIFAVSD KARIYNGSTA GGEITGHGQT 240 GIGLSQKPGI VDLHGALACE RPNLPQPLLK SHWYSLHYFT PLLFYNFSFF LTPWQSSMET 300 NSINYIESPI INSMYSDMRE KQTMVGGQHY GGLSNCMEEK LESCTLSRSD MTLDLEFTLG 360 RPTSSKEITQ KQQC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 143 | 197 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 143 | 197 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-16 | 143 | 197 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 143 | 197 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 143 | 197 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 143 | 197 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 143 | 197 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 143 | 197 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 143 | 197 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 143 | 197 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 143 | 197 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 143 | 197 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00107 | PBM | Transfer from AT5G42630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g13000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014499385.2 | 0.0 | probable transcription factor KAN4 | ||||
TrEMBL | A0A1S3U040 | 0.0 | A0A1S3U040_VIGRR; probable transcription factor KAN4 | ||||
STRING | XP_007136645.1 | 1e-180 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4463 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 7e-45 | G2-like family protein |