PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g07430.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 322aa    MW: 36230 Da    PI: 5.892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g07430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-13123174155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Vradi05g07430.1 123 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 174
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.58E-13121178No hitNo description
PROSITE profilePS5088815.288122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-17122190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13123187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MALEAVVFPQ DPFPYACKDY FYSLAGAAPD YGFQAAEEEK LLLGIINNNI EDNQYTTWDS  60
SSTSVLQNVK EQWDSHSSPE ACTVDESMIP PLSSSAEATA TATTRRKRRR TKSAKNKEEI  120
ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYVQRGDQA SIIGGAINFV KELEQVLQSM  180
ESEKRRKQGE EEENVGLNGW TTPFAEFFTF PQYTTRGTQK QEQKQWAVAD IEVTMVDSHA  240
NLKILAKKQP SHLMKIVLGL QTLRLTILHL NVTTLHHMVL YSISVKVEEG CELNTVDEIA  300
AAVNQLLGTI QEVAFSSIKH N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109RKRRR
2105110RKRRRT
3123134RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g07430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500412.10.0transcription factor bHLH94-like isoform X1
SwissprotQ9SK913e-94BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A1S3U3150.0A0A1S3U315_VIGRR; transcription factor bHLH94-like isoform X1
STRINGXP_007136288.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-93bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]