PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g05160.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 321aa    MW: 35663.8 Da    PI: 6.3507
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g05160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.52.8e-28163223259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqKe+ gs++prsYYrCt++   +C++kk v+r +++ +++e+tY+g+H+++
  Vradi05g05160.1 163 EDGFTWRKYGQKEILGSKYPRSYYRCTHQklyECQAKKMVQRLDHNANIFEVTYRGKHTCH 223
                      7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-27158224IPR003657WRKY domain
SuperFamilySSF1182905.62E-25159224IPR003657WRKY domain
SMARTSM007741.3E-36162224IPR003657WRKY domain
PROSITE profilePS5081120.277163225IPR003657WRKY domain
PfamPF031061.8E-25163223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEEVINSIRR ASELVQNLQQ DLPNLANQPE TLSLSIDQIT QAFTDAKEKL LLISRHTQTS  60
ESPPMLLHET TPQQPQMDAT LIQEWLRSSH AVTMDQMFQM QLASMAGREV EDSERTIGSE  120
GDQGQGIHAS SSRPRRRSRE GNQEKKKILV PAPQFGNTEM PPEDGFTWRK YGQKEILGSK  180
YPRSYYRCTH QKLYECQAKK MVQRLDHNAN IFEVTYRGKH TCHMSSTAPS SVPPEHILVD  240
ITQNTNTISS QLSPSVNLTL HPATATAATT SARGGPSTSR YAGDYPVLDM ADAMFNSGSS  300
SGNNSMEFLF SPTEDKSDAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-16163222968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g05160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499232.10.0WRKY transcription factor 55 isoform X1
TrEMBLA0A1S3TZN50.0A0A1S3TZN5_VIGRR; WRKY transcription factor 55 isoform X1
STRINGXP_007136416.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-54WRKY DNA-binding protein 55