PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g01660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 342aa MW: 38415.8 Da PI: 9.0398 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.2 | 7.7e-22 | 116 | 210 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 +Wt++ v++Li++++ ++++ g +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++t ++++++ ++ Vradi04g01660.1 116 KWTDNVVRLLITVVSCVGDDGTIGGvdghkrkpgvlQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTcCQVVENPALM 209 7**************888888876555566777788**********************************************846777666665 PP trihelix 83 d 83 d Vradi04g01660.1 210 D 210 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.9E-17 | 114 | 204 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MNSSGLGGGF LSGPSGAILD LESSFHRHQQ TQLGHPSITG QQHLNIMGGL ESDHPIGLIE 60 VKNLNAGLNF AKGKAIAPSN SNELSEEDEP SYAEEGNCEN LDGGKSKKGS PWQRMKWTDN 120 VVRLLITVVS CVGDDGTIGG VDGHKRKPGV LQKKGKWKTV SKIMISKGCH VSPQQCEDKF 180 NDLNKRYKRL NDILGRGTCC QVVENPALMD SIPNLSTKMK DDVEMARVFQ DPGKSLREQR 240 EWIKIQMLQL QEQNISYQAQ ALELEKQRLK WLRYCSKKDR ELERLRLENK RMKLENERRI 300 LKLKQKELET DFSTSEMSLD PASIGINRPQ GREHISLGRQ Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g01660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022635334.1 | 1e-153 | uncharacterized protein LOC106759326 isoform X1 | ||||
Refseq | XP_022635335.1 | 1e-153 | uncharacterized protein LOC106759326 isoform X1 | ||||
TrEMBL | A0A445BV83 | 0.0 | A0A445BV83_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445BVB4 | 0.0 | A0A445BVB4_ARAHY; Uncharacterized protein | ||||
STRING | XP_007150380.1 | 1e-143 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 6e-54 | sequence-specific DNA binding transcription factors |