PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g01270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 25240.6 Da PI: 9.7068 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.9 | 3.8e-11 | 110 | 151 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa ++++a+ Vradi04g01270.1 110 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 151 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-5 | 109 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-4 | 109 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-7 | 110 | 154 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-6 | 112 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVSLRRRRLL GLCSGNSSFV TPLPLYCENL SSLENSTQQA KPKSEQPVLS DDASNLDSNT 60 AVLEEPGSSN VSGSSSSKEQ LIQPITAGPP IKRRKRHRRK NLHNQEPCLM RGVYFKNMKW 120 QAAIKVDKKQ IHLGTVGSQE EAAHLYDRAA FMCGREPNFE LPEEEKRELS KFKWDEFLAM 180 TRQAITRKKH KRRLSPGPGN SHDMLPLPKD DWDSKQGVSE DAE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 193 | RKKHKRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g01270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014498244.1 | 1e-166 | ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_014498245.1 | 1e-166 | ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_014498247.1 | 1e-166 | ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
TrEMBL | A0A1S3TWV9 | 1e-165 | A0A1S3TWV9_VIGRR; ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
STRING | XP_007140664.1 | 1e-137 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5457 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 8e-48 | ERF family protein |