PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0498s00020.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 356aa MW: 40212.7 Da PI: 6.3524

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0498s00020.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.1	6.7e-12	76	110	3	36
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee.kvk 36 ++k+ rr ++NReAAr++R+RKka++++Le+ +vk Vradi0498s00020.1 76 DSKVLRRQAQNREAARKCRLRKKAYVQQLETsRVK 110 6899*************************962444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.6E-8	70	120	No hit	No description
SMART	SM00338	5.7E-4	73	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.76	76	111	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.5E-9	77	113	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.03E-8	79	110	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-14	166	218	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MNSSSTQLVL AKRMGIYDPF HQVNMWGDSF KIDGSLNSVA TPMFMMKPSM QNDPECTPHE 60 SREPSGDDQE NNEKTDSKVL RRQAQNREAA RKCRLRKKAY VQQLETSRVK LMQLELEIEK 120 AKKQGMYISS TPDVSYMGSS GTINPGITLF ELEYGQWIEE LDRQNEELRN ALHTRDSDMQ 180 LHLLVESCLS HYSNLFRMKA EAAKADVFYM ICGAWKASII VPQLEPLTDQ QIVSINKLRL 240 SSQQAEDALS LGLDKLQQSL VHNIPSDPLA IGHYGFEMAA AMDKGEALEG FVNQLVPQAD 300 HLRQQTLLYM SRILTPGQTA QGLVAMGEYF HRLRTLSSLW TAHSCDRSFP TYLSN*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MNSSSTQLVL AKRMGIYDPF HQVNMWGDSF KIDGSLNSVA TPMFMMKPSM QNDPECTPHE  60
SREPSGDDQE NNEKTDSKVL RRQAQNREAA RKCRLRKKAY VQQLETSRVK LMQLELEIEK  120
AKKQGMYISS TPDVSYMGSS GTINPGITLF ELEYGQWIEE LDRQNEELRN ALHTRDSDMQ  180
LHLLVESCLS HYSNLFRMKA EAAKADVFYM ICGAWKASII VPQLEPLTDQ QIVSINKLRL  240
SSQQAEDALS LGLDKLQQSL VHNIPSDPLA IGHYGFEMAA AMDKGEALEG FVNQLVPQAD  300
HLRQQTLLYM SRILTPGQTA QGLVAMGEYF HRLRTLSSLW TAHSCDRSFP TYLSN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0498s00020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-115	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022632762.1	0.0	transcription factor TGA7
Swissprot	Q93ZE2	1e-112	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A3Q0ERB8	0.0	A0A3Q0ERB8_VIGRR; transcription factor TGA7
STRING	XP_007141120.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-115	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]