PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0417s00050.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 534aa    MW: 59517.8 Da    PI: 7.6297
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0417s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.6e-33200257260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +Dg+nWrKYGqK+vkgse+prsYY+Ct+++C+vkkkve+s  d++++ei+Y+g+Hnh+k
  Vradi0417s00050.1 200 EDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSL-DGQITEIVYKGHHNHPK 257
                        7****************************************.***************85 PP
2WRKY101.74.3e-32368426159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYGqK+vkg++++rsYY+Ct +gC+v+k+ver+a+d k+v++tYeg+Hnh+
  Vradi0417s00050.1 368 LDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHD 426
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28189258IPR003657WRKY domain
PROSITE profilePS5081122.986194258IPR003657WRKY domain
SuperFamilySSF1182904.05E-25195258IPR003657WRKY domain
SMARTSM007742.5E-36199257IPR003657WRKY domain
PfamPF031064.8E-25200256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-36353428IPR003657WRKY domain
SuperFamilySSF1182901.18E-27360428IPR003657WRKY domain
PROSITE profilePS5081136.483363428IPR003657WRKY domain
SMARTSM007741.7E-36368427IPR003657WRKY domain
PfamPF031063.2E-24369426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MTMGDYNSNW GTSEYNHHQL GLDVPKFKSV QPPSLPLSSS PPSPSSYLPF SSAFSPSEFF  60
NSSLFLPSPN IFASPTTEAL AAQTFNWRSG SGEEQQQRDK EDEKNYSDFS FQTQIQSSSG  120
MLQVQEPLKK QDIWKFNEPS KQTDYSSERT ATKSEYPSIQ SFSAEMTSDK SELQSNSVPG  180
SGRFDYANAS QSVREQKRSE DGFNWRKYGQ KQVKGSENPR SYYKCTHPNC SVKKKVEKSL  240
DGQITEIVYK GHHNHPKPQS TRRTSSQSIH QPSSSCTNSG ISDQSVVTLG NPQMDRFSMQ  300
EDSSASVGEE EFEQTSQTSY SGGDEDNLGP EAKRWKGDNE NDDYSASGSR TVREPRVVVQ  360
TTSEIDILDD GFRWRKYGQK VVKGNPNARS YYKCTAPGCS VRKHVERAAH DIKAVITTYE  420
GKHNHDVPAA RGSASYNMNR NSLNNNISAP IRPSAVNCYS NSSGFKNSLY NNTKLPATRN  480
QESFNPGNFG QSALNKSMGS YTDHAPYSHA TYSNAKDEKK DDSFLQSFLS KDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38191429878Probable WRKY transcription factor 4
2lex_A4e-38191429878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0417s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493151.10.0probable WRKY transcription factor 33 isoform X1
TrEMBLA0A1S3THB60.0A0A1S3THB6_VIGRR; probable WRKY transcription factor 33 isoform X1
STRINGXP_007140176.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-108WRKY DNA-binding protein 33