PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g08950.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 387aa    MW: 42521.5 Da    PI: 7.833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g08950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-121454148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed++l+ +++++G+g+W++        R++k+c++rw++yl
  Vradi03g08950.1 14 KGAWTVQEDQKLIAYIHKHGTGSWRL-------QRCGKSCRLRWFNYL 54
                     79************************.......7999*********97 PP
2Myb_DNA-binding51.52.3e-1660105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+++++++ + lG++ W++Ia++++  Rt++++k++w++yl
  Vradi03g08950.1  60 RGKLSPEEEQKIIKLQAVLGNR-WSSIAKHLP-MRTDNEIKNYWNSYL 105
                      7999******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.112954IPR017930Myb domain
SuperFamilySSF466892.57E-2412101IPR009057Homeodomain-like
SMARTSM007173.8E-81356IPR001005SANT/Myb domain
PfamPF002491.7E-121454IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-181561IPR009057Homeodomain-like
PROSITE profilePS5129425.57555109IPR017930Myb domain
SMARTSM007174.1E-1559107IPR001005SANT/Myb domain
PfamPF002493.1E-1560105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2462108IPR009057Homeodomain-like
CDDcd001671.21E-1264105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGRTPCCSHD QLRKGAWTVQ EDQKLIAYIH KHGTGSWRLQ RCGKSCRLRW FNYLRPDIKR  60
GKLSPEEEQK IIKLQAVLGN RWSSIAKHLP MRTDNEIKNY WNSYLKRHYE KNDVYPSSSK  120
PISTASSTES KSSDLCKVPS KETDCHGPNA TPHQSNQTNL PKTMSSSTQL LNRVASKILS  180
SGYLDAIKSY QHAIAGKSNG DSVVKTGIGV EKEGNRDPLL PNLTSSNHSV TCSAQLLNKM  240
ATSLPHKVHG LESAKAVFSK LLESSEKGDS GSDGSFISSD QIGECLNALS PFEDGPHITN  300
VVGSPSSPSL IFNQVTTPSC FSDNEDNWQN VSSNYVSFRQ CAPTAPECSV SELNLGESSS  360
STSCFLFENT DLGICDDEIS KYIQYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121075106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g08950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495171.10.0transcription factor MYB34
TrEMBLA0A1S3TN300.0A0A1S3TN30_VIGRR; transcription factor MYB34
STRINGXP_007134825.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1699968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60890.13e-52myb domain protein 34