PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0349s00020.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 482aa MW: 51905.5 Da PI: 8.0055

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0349s00020.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.8	1.2e-29	146	204	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg Hnh+ Vradi0349s00020.1 146 NDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCAQDMSILITTYEGIHNHP 204 8*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-31	130	206	IPR003657	WRKY domain
SuperFamily	SSF118290	8.89E-27	138	206	IPR003657	WRKY domain
PROSITE profile	PS50811	28.311	140	206	IPR003657	WRKY domain
SMART	SM00774	4.7E-36	145	205	IPR003657	WRKY domain
Pfam	PF03106	1.0E-25	146	204	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MQFPSQTSSH QLKEDNTTQS SPPDEQHPRQ QEILMQEPAL ATPERSTVEA GPKEGDELEN 60 AKAEMGKVPK TLKEEEDKEG LSLGLEWKLE TSKSGSPSNS VEEVVKEEGG GESKGQKTNR 120 DEIGEQNPAK KARVCVRARC DTPTLNDGCQ WRKYGQKISK GNPCPRAYYR CTVAPSCPVR 180 KQVQRCAQDM SILITTYEGI HNHPLPLSAT AMASTTSAAA SMLLSGSRTS PNITTTAADL 240 HGINFSLSDS SQPNQYYLSH PSLSSSPSHP TITLDLTSNP SSSSPPFVKF TSNSNYNPHR 300 YPPSTSLSFT SSQSNTTSWT NGFFTYNNQP YNNNRNTNAN VNVLGNINLG KQQPMENIYS 360 SFMQRNNNSI PPLPDTIAAA TKVITADPNF QSALAAALSS VIGSGSIQGN QGTVENLIQK 420 IKWGELLPPS SSKVNGCASS FLNKSPANSQ AGSLMFLQPP LPLSSPKSAS GSPGDHRDKK 480 N*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MQFPSQTSSH QLKEDNTTQS SPPDEQHPRQ QEILMQEPAL ATPERSTVEA GPKEGDELEN  60
AKAEMGKVPK TLKEEEDKEG LSLGLEWKLE TSKSGSPSNS VEEVVKEEGG GESKGQKTNR  120
DEIGEQNPAK KARVCVRARC DTPTLNDGCQ WRKYGQKISK GNPCPRAYYR CTVAPSCPVR  180
KQVQRCAQDM SILITTYEGI HNHPLPLSAT AMASTTSAAA SMLLSGSRTS PNITTTAADL  240
HGINFSLSDS SQPNQYYLSH PSLSSSPSHP TITLDLTSNP SSSSPPFVKF TSNSNYNPHR  300
YPPSTSLSFT SSQSNTTSWT NGFFTYNNQP YNNNRNTNAN VNVLGNINLG KQQPMENIYS  360
SFMQRNNNSI PPLPDTIAAA TKVITADPNF QSALAAALSS VIGSGSIQGN QGTVENLIQK  420
IKWGELLPPS SSKVNGCASS FLNKSPANSQ AGSLMFLQPP LPLSSPKSAS GSPGDHRDKK  480
N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-20	132	206	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0349s00020.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022632025.1	0.0	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	4e-89	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A3Q0EK31	0.0	A0A3Q0EK31_VIGRR; probable WRKY transcription factor 61
STRING	XP_007138208.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	1e-50	WRKY DNA-binding protein 61

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]