PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0332s00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 311aa MW: 34989.3 Da PI: 7.9501 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.5 | 4.8e-28 | 146 | 233 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+ +eH+H+l+p Vradi0332s00180.1 146 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFIQEHTHPLTP 233 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-25 | 146 | 233 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MGGLLKWAVQ ITWAQPVSTS GLGKIDQNER VDFLYNSNED LTRKVRYTGG LIWLPSVEFG 60 IDGSINGETV GNVTLEQINS CSTPDENKVG CSSFNPAYKH DHDDNITQDS SGGDTIPSGI 120 PAVSVVSADE PYVGQEFDSE AAAHAFYNAY ATRVGFIIRV SKLSRSRRDG SAIGRALVCN 180 REGYRMPDKR EKIVRQRAET RVGCRAMILV RKVSSGKWVV TKFIQEHTHP LTPGKGRRDC 240 IYEQYPNEHD KIRELSQQLA IEKKRSATYK RHLELIFEHI EEHNESLSKK IQHIVDSVKE 300 METKEQQSHR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0332s00180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521908.2 | 0.0 | protein FAR1-RELATED SEQUENCE 12 | ||||
TrEMBL | A0A1S3VU47 | 0.0 | A0A1S3VU47_VIGRR; protein FAR1-RELATED SEQUENCE 12 | ||||
STRING | XP_007150433.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-87 | FAR1 family protein |