PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0332s00180.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 311aa    MW: 34989.3 Da    PI: 7.9501
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0332s00180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.54.8e-28146233291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        fYn+YA++vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+ +eH+H+l+p
  Vradi0332s00180.1 146 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFIQEHTHPLTP 233
                        ******************************************9988..9**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-25146233IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGGLLKWAVQ ITWAQPVSTS GLGKIDQNER VDFLYNSNED LTRKVRYTGG LIWLPSVEFG  60
IDGSINGETV GNVTLEQINS CSTPDENKVG CSSFNPAYKH DHDDNITQDS SGGDTIPSGI  120
PAVSVVSADE PYVGQEFDSE AAAHAFYNAY ATRVGFIIRV SKLSRSRRDG SAIGRALVCN  180
REGYRMPDKR EKIVRQRAET RVGCRAMILV RKVSSGKWVV TKFIQEHTHP LTPGKGRRDC  240
IYEQYPNEHD KIRELSQQLA IEKKRSATYK RHLELIFEHI EEHNESLSKK IQHIVDSVKE  300
METKEQQSHR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0332s00180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521908.20.0protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A1S3VU470.0A0A1S3VU47_VIGRR; protein FAR1-RELATED SEQUENCE 12
STRINGXP_007150433.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-87FAR1 family protein