PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g04070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 282aa    MW: 31786.9 Da    PI: 6.3237
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g04070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.45.7e-29116203291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      fYn+YA++vGF vr+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a+++v+k ++gkw+vtkl++eH+H+l+p
  Vradi02g04070.1 116 FYNAYATDVGFIVRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMIMVRKVSSGKWVVTKLVKEHTHPLTP 203
                      ******************************************9988..9**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-26116203IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MYATDYLLVG LSHIVLNLVY LRAIPKHQLL VTVEFEIDGT GETVTNAAID EISSVADDNG  60
EGESIEPNYK QDEGDNVAQD SSGITIPFAI PTVSVVAVEE PYVGQEFESE SAAQAFYNAY  120
ATDVGFIVRV SKLSRSRRDG TAIGRALVCN KEGFRMPDKR EKIVRQRAET RVGCRAMIMV  180
RKVSSGKWVV TKLVKEHTHP LTPGKGRRDF VYEQYPNEHD KIRELSQQLA CEKKRSATYK  240
RHLELIFEHI EEHNESLSKK IQNIVDSVRE MEKTKEQQSQ L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g04070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493398.10.0protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A1S3THZ70.0A0A1S3THZ7_VIGRR; protein FAR1-RELATED SEQUENCE 7
STRINGXP_007131945.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-94FAR1 family protein