PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g04070.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 282aa MW: 31786.9 Da PI: 6.3237

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g04070.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.4	5.7e-29	116	203	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF vr+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a+++v+k ++gkw+vtkl++eH+H+l+p Vradi02g04070.1 116 FYNAYATDVGFIVRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMIMVRKVSSGKWVVTKLVKEHTHPLTP 203 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-26	116	203	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MYATDYLLVG LSHIVLNLVY LRAIPKHQLL VTVEFEIDGT GETVTNAAID EISSVADDNG 60 EGESIEPNYK QDEGDNVAQD SSGITIPFAI PTVSVVAVEE PYVGQEFESE SAAQAFYNAY 120 ATDVGFIVRV SKLSRSRRDG TAIGRALVCN KEGFRMPDKR EKIVRQRAET RVGCRAMIMV 180 RKVSSGKWVV TKLVKEHTHP LTPGKGRRDF VYEQYPNEHD KIRELSQQLA CEKKRSATYK 240 RHLELIFEHI EEHNESLSKK IQNIVDSVRE MEKTKEQQSQ L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g04070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014493398.1	0.0	protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A1S3THZ7	0.0	A0A1S3THZ7_VIGRR; protein FAR1-RELATED SEQUENCE 7
STRING	XP_007131945.1	1e-160	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-94	FAR1 family protein