PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0281s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 330aa    MW: 37498.7 Da    PI: 6.5129
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0281s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12193218126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y   +C+++ +tG+C yGd+CkF+H+
  Vradi0281s00010.1 193 YQPDICKDYKETGYCGYGDSCKFMHD 218
                        67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9191223IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878192220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12193223IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10193218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.3E-13256311IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.44E-13269312No hitNo description
PfamPF139208.7E-9269311No hitNo description
PROSITE profilePS5008910.453270308IPR001841Zinc finger, RING-type
SMARTSM001841.7E-4270307IPR001841Zinc finger, RING-type
CDDcd001624.14E-8270311No hitNo description
PROSITE patternPS005180285294IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEDSDQPAKS TENQQTEQVC SFFRKPINKK NIRKRTIDDE DNEEDSNKET SLLHVQKKTL  60
KPDNKLFFST GSSKSSVSAE PSEESGKPVF QFESSKEIQV QHDSKATAIL ETETEFSKDA  120
RAIRERALKQ ASESLKGKSA RPEDEKLYKG MNSYKDYKAG FRREQTIASE KAGGAHGPLR  180
ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQLEK EWDEAEKARK  240
MRLAAGEDAD EEEGANLNDE DDEDSLPFAC FICRNPFADP VVTKCKHYFC EHCALKHHAK  300
NKKCFVCNQP TLGIFNVAHE IRRKMAEDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M9e-69103325113317RING finger protein 113A
5z58_M9e-69103325113317RING finger protein 113A
6ff4_t9e-69103325113317RING finger protein 113A
6ff7_t9e-69103325113317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0281s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523021.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_014523022.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_022632297.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-162C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1S3VXV00.0A0A1S3VXV0_VIGRR; zinc finger CCCH domain-containing protein 1
STRINGXP_007134882.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-144C3H family protein