PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0214s00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 285aa MW: 32525.8 Da PI: 7.2799 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 71.5 | 1.1e-22 | 135 | 196 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy WrKYGqK +++++ rsYYrCt++ gCp+ k+v+r +edp + ++tY g+H+++ Vradi0214s00140.1 135 MEDGYVWRKYGQKITTNAKYLRSYYRCTHKhdkGCPAIKQVQRIQEDPPLYQTTYYGHHKCK 196 58***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-24 | 121 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-23 | 128 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.885 | 130 | 198 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-31 | 135 | 197 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-22 | 136 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MVNQPSTERR AMEEELVKGR DVANQLLEVC VHRSNTYQHH HEDVQGSMLP FIEDLVRKVL 60 CSFTNTLLLL NTDNDVSTEV PIPKTVKDVP SFSKCPNPQH TDEVCKGFFQ TKKPRGSYKR 120 KSSAPTWVTS SSILMEDGYV WRKYGQKITT NAKYLRSYYR CTHKHDKGCP AIKQVQRIQE 180 DPPLYQTTYY GHHKCKSSSS SDIVMESATP SGSSVFLSFS NTLPTKEQYQ LKSCFLSSST 240 KEEPVEVIQD ELLADHSPLA LSDYLLLCDY ELDFNYMRHV TTLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-17 | 135 | 196 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0214s00140.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017423510.1 | 0.0 | PREDICTED: probable WRKY transcription factor 70 | ||||
TrEMBL | A0A0L9UK96 | 0.0 | A0A0L9UK96_PHAAN; Uncharacterized protein | ||||
STRING | XP_007149559.1 | 1e-169 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12638 | 11 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 4e-27 | WRKY DNA-binding protein 70 |