PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g14060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 398aa    MW: 43306.6 Da    PI: 6.9879
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g14060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.7e-30211269259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YYrC+s  gC ++k+vers+++p+++++tY+geH+h 
  Vradi01g14060.1 211 ADSWAWRKYGQKPIKGSPYPRNYYRCSSCkGCAARKQVERSNTEPNMFIVTYTGEHKHA 269
                      69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30196271IPR003657WRKY domain
PROSITE profilePS5081131.777205271IPR003657WRKY domain
SuperFamilySSF1182905.23E-26205271IPR003657WRKY domain
SMARTSM007744.6E-35210270IPR003657WRKY domain
PfamPF031064.9E-25212268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MTQDDWDLFA IVRSCKAATF TATTTTPNPP TVTSTTTPRS PNTTSCFGSS HENASFSFPN  60
LLQPPTNESQ ELHQLLIDFN PTTTTTISST ITSAIGINPN STFSDVAGFI GQQHIQQGHH  120
HHLVPAPTNH TSIGAPSTTG FDRFQEQHHH QQHQSQTPEQ QQRKQNLPQL QAPQTSPILS  180
PTTQPQTPRS RKRKNHQKKI VRHVTADNLS ADSWAWRKYG QKPIKGSPYP RNYYRCSSCK  240
GCAARKQVER SNTEPNMFIV TYTGEHKHAK PVHRNSLAGS TRTKPSPTGL PEANEAISGI  300
KIENACSSTS ELSTTSLKSG TPENEETVAD GEPDFPEMEV DPDALSDNDY DLLIPNTGAM  360
SDAVLLGLTN GAQTKGSDPN SESGLTQSKS DPFSNTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-172112711779Disease resistance protein RRS1
5w3x_D2e-172112711779Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g14060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014501758.10.0probable WRKY transcription factor 27
TrEMBLA0A1S3U6U90.0A0A1S3U6U9_VIGRR; probable WRKY transcription factor 27
STRINGXP_007152141.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-52WRKY DNA-binding protein 27