PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g03350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 353aa    MW: 39242.9 Da    PI: 7.2872
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g03350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08128149426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      + C+ f++ G Ck Gd+C FaHg
  Vradi01g03350.1 128 AACPEFRK-GSCKKGDTCEFAHG 149
                      78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0876113IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915125151IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6128149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5129151IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643159183IPR000571Zinc finger, CCCH-type
SMARTSM0035614159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMLGEHHRAN PTVHVPPWPT HDDPTAEMYS SFLSNDVNAA EYSPYYIQEA LTALQRYLPA  60
NETDADSDSE AQPDAPVDAY SCDHFRMYEF KVRRCARGRS HDWTECPYAH PGEKARRRDP  120
RKYHYSGAAC PEFRKGSCKK GDTCEFAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH  180
TPEQLRLVPM QSPRSSGDSY DGSPMRQVLQ SSAFMSSPAA SLSPPESPPV SPSMNEMVAS  240
LRNLQLGKMK SMPHNRNVSV GSPGYGSPRG SVLRPGFCSL PTTPTQQPGR SGVNYLDIWE  300
QSVEEEPVME RVESGRGIRA KMFEKLSKEN SLEGSGQGSG APDVGWVSEL VK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g03350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515626.10.0zinc finger CCCH domain-containing protein 20
SwissprotO821991e-139C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A1S3VB940.0A0A1S3VB94_VIGRR; zinc finger CCCH domain-containing protein 20
STRINGXP_007152945.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-141C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]