PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g01960.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 310aa    MW: 33931.5 Da    PI: 6.4197
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g01960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08121145126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC+ f++ GtC+y  +C+FaH+
  Vradi01g01960.1 121 FKTKLCCKFRA-GTCPYITNCNFAHS 145
                      69*********.*************8 PP
2zf-CCCH18.53.6e-062022141426
                      --TTTTT-SS-SS CS
          zf-CCCH  14 tCkyGdrCkFaHg 26 
                      +C++G++C+FaHg
  Vradi01g01960.1 202 YCPFGNKCHFAHG 214
                      9***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.0E-14118153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-8118151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84120147IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035120146IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5121145IPR000571Zinc finger, CCCH-type
SMARTSM0035614195215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-6202218IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.883202216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MFKLIFVSDC LEEDSLVRTR KETVDSISSA AAVLGALLDG NVVQIITGGG GGGESWSGDQ  60
ADWATEDEYR YWNSNNNNNG DAESTPSNSN YESRSEPPSK KSRNSQDGSS NRSKAIGKMF  120
FKTKLCCKFR AGTCPYITNC NFAHSIEELR RPPPNWQEIV AAHEEEKAVM AEPREEFQIP  180
TVGSSTFAGD TMQRSYKGRH WYCPFGNKCH FAHGATELHR YGGGLMEGES RDGASVVGCD  240
TNKGAASKAS ADNVVAAVTP VAHSDVYHIG VPSQRPSIVI QRPGQRTHQK WKGPDKISRI  300
YGDWIDDIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g01960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028789152.11e-122zinc finger CCCH domain-containing protein 12-like
RefseqXP_028802815.11e-122zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM32e-51C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1R3JEQ51e-121A0A1R3JEQ5_9ROSI; Zinc finger, CCCH-type
STRINGEMJ105121e-109(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-53C3H family protein