PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0169s00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 22417.8 Da PI: 8.2983 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.1 | 3.2e-29 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C++lr++C++dCv++p++ ++q++++ ++ k++G++ +l+l++a+p+++r+d+++sl+yeA+ r+ +P G+vg+++++++ Vradi0169s00060.1 4 SCNGCRILRKGCTDDCVIRPCLewinsSEAQANATLFLSKFYGRAGLLNLINAAPQQHRTDVFKSLMYEACGRIINPTFGSVGLFWSGEWAQ 95 6*********************9998777889************************************************************ PP DUF260 88 eqlkaelallkee 100 +q++++++l++++ Vradi0169s00060.1 96 CQAAVDAVLAGSQ 108 ******9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.351 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-24 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MKISCNGCRI LRKGCTDDCV IRPCLEWINS SEAQANATLF LSKFYGRAGL LNLINAAPQQ 60 HRTDVFKSLM YEACGRIINP TFGSVGLFWS GEWAQCQAAV DAVLAGSQIN VMPTSHSQSD 120 HGSKLLDIRH VSKDANMDKV KGKSKKHKDI MMPMSHEGLV NSTTLWKPIL GHEPRQLEGG 180 NVLVSQDKPR INDGANIDLE LTLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0169s00060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-159 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014523544.1 | 1e-152 | LOB domain-containing protein 42-like | ||||
Swissprot | Q9CA30 | 2e-60 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A1S3VZR8 | 1e-151 | A0A1S3VZR8_VIGRR; LOB domain-containing protein 42-like | ||||
STRING | XP_007153445.1 | 1e-128 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-62 | LOB domain-containing protein 42 |