PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0007s00850.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 205aa    MW: 23013.4 Da    PI: 4.8812
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0007s00850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.6e-141456148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +lv +++++G+g+W++    ++ + t++++k++w+++l
  Vradi0007s00850.1 14 KGPWTPEEDIILVSYIQEHGPGNWRS----VP-TNTDNDIKNYWNTHL 56
                       79************************....55.5566********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-20562IPR009057Homeodomain-like
SuperFamilySSF466891.29E-14862IPR009057Homeodomain-like
PROSITE profilePS5129420.333960IPR017930Myb domain
SMARTSM007172.3E-101358IPR001005SANT/Myb domain
PfamPF002497.8E-131456IPR001005SANT/Myb domain
CDDcd001675.46E-111656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTDNDIKN YWNTHLKKKL  60
KKFQAAIDPH SASDSATSGQ YLPKSFNDRR SLDMSSSNNN HVSSHKRNKD EQEGGVDMAS  120
HEEFDSILSF ENLNNAAWDK STCDSMPDKS PEAAAESSHE VSQEERIRQK SENNSAPPLS  180
FLEKWLLDES VGQVEEMMEL SPMF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0007s00850.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-164AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027358660.16e-68myb-related protein 306-like
SwissprotB3VTV71e-41MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A0L9U7591e-61A0A0L9U759_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RX521e-61A0A0S3RX52_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TBJ01e-61A0A1S3TBJ0_VIGRR; myb-related protein 306
STRINGXP_007161907.16e-56(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2226344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.14e-31myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]