PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0024s0133.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family MYB_related
Protein Properties Length: 749aa    MW: 81389 Da    PI: 6.7477
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0024s0133.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-08676724247
                          SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                          g+W++  ++ lv a kq +++    +W+++a  ++ g+t  qc  r+  +
  Vocar.0024s0133.1.p 676 GAWSEAQELALVAALKQCPKElgaeRWDAVAVLVP-GKTKAQCFKRFKEL 724
                          89*****************99**************.*******9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.7E-19106194IPR001623DnaJ domain
SuperFamilySSF465651.18E-17111209IPR001623DnaJ domain
SMARTSM002714.8E-13113181IPR001623DnaJ domain
CDDcd062571.20E-13114178IPR001623DnaJ domain
PfamPF002264.1E-17114186IPR001623DnaJ domain
PROSITE profilePS5007616.995114189IPR001623DnaJ domain
PRINTSPR006258.6E-6119137IPR001623DnaJ domain
PRINTSPR006258.6E-6137152IPR001623DnaJ domain
PRINTSPR006258.6E-6161181IPR001623DnaJ domain
PROSITE patternPS006360166185IPR018253DnaJ domain, conserved site
PROSITE profilePS512938.215476526IPR017884SANT domain
SMARTSM007172.6E-5477529IPR001005SANT/Myb domain
CDDcd001672.31E-4480519No hitNo description
SuperFamilySSF466895.23E-7480521IPR009057Homeodomain-like
PROSITE profilePS512937.099673729IPR017884SANT domain
SMARTSM007174.9E-6674727IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-6675724IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-4676724IPR009057Homeodomain-like
PfamPF002491.1E-6676724IPR001005SANT/Myb domain
CDDcd001673.66E-5677724No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MLLSRHLSLE FVEELRPGTP DGRLVTCSVA GPVPYGAKDP AGYYFHLKAL QQAGLWEDPT  60
PTEDADADAN GTADAAASAA AAAGADSDKP PPGVDWKGSK ARKRKAVKKK DGSDPYSLLG  120
LANERWTASE AQIRAAYRKT CLENHPDKAL INVTDEAERE RIVEHFKTIQ DAYDILSDPA  180
KRREFDSTDE FDDTLPLQCD PKDFLKVFGP AFRRNARWST VEPVPDVGDD STPWGDVSKF  240
YDFWYTFKSW REFPHPDEED VEAAESREHR RWIERNNAKL REKGKKEEGR RLREFVDAAY  300
KHDPRVLRKK EEDRLERERK KAEKEEARRR AQEEEEARKA AEEEARRVAE EEAKRVAEEA  360
RKQREAVKAQ LKQLRKRLRT VAEGSGGARL VSEDDVEKLI TKLEPEALAV LVEALSSCDI  420
SEGETAAAAQ KGLLTEALRG IDQREEEAAR TREAAKREAE LAAKVAAREE HRRKMAAMRE  480
WSEEELRLLD KACNKFPMGT PKRWEAVAAF VRTRTLDEVL LMVKDRQGAS ATRMKAQEDW  540
KGAQKKPAEV RAQADTRAEA FTDVEVKLTG EAAIKLMQPA AKSASGATAA TATAAASAAP  600
AAKAAASGGS STGTPAAPAS PSSSSARSKA AKTPAATATA AGAPSEGTTE AAAGATTASS  660
AAAAKGVKKA AVADSGAWSE AQELALVAAL KQCPKELGAE RWDAVAVLVP GKTKAQCFKR  720
FKELREAFRS KKQAAGEGGG GGGDDGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A8e-1620330620123Zuotin
5dje_B8e-1620330620123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373379LRKRLRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1101350.0AF110135.1 Volvox carteri f. nagariensis GlsA (glsA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002953749.10.0asymmetric division protein GlsA
TrEMBLQ9S7290.0Q9S729_VOLCA; GlsA
STRINGXP_002953749.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP118489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.12e-67DnaJ domain ;Myb-like DNA-binding domain