PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang2464s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 332aa    MW: 37770.3 Da    PI: 6.669
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang2464s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12195220126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y   +C+++ +tG+C yGd+CkF+H+
  Vang2464s00010.1 195 YQPDICKDYKETGYCGYGDSCKFMHD 220
                       67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9193225IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7194221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878194222IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10195220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12195225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.3E-13259313IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139208.8E-9271313No hitNo description
SuperFamilySSF578508.16E-13271314No hitNo description
SMARTSM001841.7E-4272309IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.453272310IPR001841Zinc finger, RING-type
CDDcd001621.17E-7272313No hitNo description
PROSITE patternPS005180287296IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
LIMEDSDQPA KSTENQQTEQ VCSFFRKPIN KKNIRKRTID DEDNEEDSNK ETSVLHVQKK  60
TLKPDNKLFF STGSSKSSVS AEPSEESGKP VFQFESSKEI QVQHDSKATA TLETETEFSK  120
DARAIRERAX KQASESLKGK SXRPEDEKLY KGMNSYKDYK AGFRREQTIA SEKAGGAHGP  180
LRASAHIRVS ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQL EKEWEEAEKA  240
RKMRLAAGEX ADEEEGANLN DEDDEDSLPF ACFICRNPFA DPVVTKCKHY FCEHCALKHH  300
AKNKKCFVCN QPTLGIFNVA HEIRRKMAED K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-67133276317RING finger protein 113A
5z58_M4e-67133276317RING finger protein 113A
6ff4_t4e-67133276317RING finger protein 113A
6ff7_t4e-67133276317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang2464s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410477.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_017410479.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_017410638.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_017410639.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_017410640.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_017410641.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_017410642.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-162C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0S3SY180.0A0A0S3SY18_PHAAN; Uncharacterized protein
STRINGXP_007134882.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-136C3H family protein