PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g16070.1
Common NameLR48_Vigan01g293900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CAMTA
Protein Properties Length: 989aa    MW: 110796 Da    PI: 8.449
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g16070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.62.8e-54201353117
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwl++ ei++iL n++k++lt +++ rp+ gs++L+nrk +ryfrkDG+ w+kkk gktvrE+hekLKvg+v+vl+cyYah+e+n++fqr
  Vang11g16070.1  20 QEaSHRWLRPVEICEILRNYKKFKLTPDPPIRPPAGSVFLFNRKALRYFRKDGHRWRKKKGGKTVREAHEKLKVGSVDVLHCYYAHGEDNENFQR 114
                     5559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylev 117
                     r++w+L+++le++vlvhy+e 
  Vang11g16070.1 115 RSFWMLDQQLEHVVLVHYREI 135
                     ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.79715141IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-7318136IPR005559CG-1 DNA-binding domain
PfamPF038593.0E-4821134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.6E-5444532IPR013783Immunoglobulin-like fold
SuperFamilySSF812966.12E-15446531IPR014756Immunoglobulin E-set
SuperFamilySSF484032.35E-15635740IPR020683Ankyrin repeat-containing domain
CDDcd002041.92E-13640737No hitNo description
Gene3DG3DSA:1.25.40.203.3E-15641741IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.945645739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.244678710IPR002110Ankyrin repeat
SuperFamilySSF525402.1E-8845900IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.015849871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242850879IPR000048IQ motif, EF-hand binding site
PfamPF006120.0013853870IPR000048IQ motif, EF-hand binding site
SMARTSM000150.01872894IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.645873901IPR000048IQ motif, EF-hand binding site
PfamPF006128.8E-4876894IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MAETTKFIPN SQLELEEILQ EASHRWLRPV EICEILRNYK KFKLTPDPPI RPPAGSVFLF  60
NRKALRYFRK DGHRWRKKKG GKTVREAHEK LKVGSVDVLH CYYAHGEDNE NFQRRSFWML  120
DQQLEHVVLV HYREIKEGCK SGISPFPVVP VTLVGSSQNS SVLSSTRTKT PISVVQTSFT  180
SSANKVDQNG HSSEYEDVNS KDGPQASSHA QPISNSIIHS SPSFTHEVAG FSELVRNPLI  240
STLSSTFPSY SPGTVFSQRT LAQNSCRNKI YMHDERHHNE GSVESSEADF TVHLLNKAKI  300
DAVNKMQDGV IFRDSHMYIQ QVEENLLTVG QVQNEDGLDT FCAQLYDHND HPIVATTKAL  360
VEQKLKDGES KQAETGEIKK LDSFGRWMDK EIGGDCENSL MASDSSNYWS TLGAHNEDKE  420
VSSLQHIQLD MDSLGPSLSQ EQLFSIHDFS PEWAYTGVRT KVLIVGTFIG SKKPSSETKW  480
GCMFGEIEVS AEALAGNVIQ CQTPLHSSGR VPFYVTCSNR LACSEVREFQ FDEHPTKCLG  540
PLGIKISPEV EVRLQIRLLK LVDLGSDNNL LKCSVSGCEK CKLKGIMYSM RGDSGVFKET  600
FQIDGIDHIN PRDVLFQRLM RDKLYEWLIY KVHEGGKGSH VLDAEGQGVI HLAAALGYVW  660
AMAPLVAAGI SPNFRDNRGR TGLHWASYFG REETVIALVK LGAAPGAVED PTSALPPGQT  720
AADLASSRGH KGIAGYLAEA DLINRLSILT VKENETGNIA TTIATDSAFQ SVEDDSSNLT  780
IYEQHYLKES LAVFRKSAHA AASILAAFRA RSFCQRQLAK SGSDISDSVL DIVADSLSKV  840
QNMYHFEDYL HFAALKIQKR YRGWKGRKDF LKIRNRIVKI QAHIRGHQVQ KQYKKVVWSV  900
SIVEKAILRW RRKGAGLRGF RGGQPVGIDE YDFLSVGRRQ KSDDVKKALD RVKSMVRNPD  960
ARDQYMRLIM KYQNFKIDDR GSTQSRVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g16070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437683.10.0PREDICTED: calmodulin-binding transcription activator 1-like isoform X1
RefseqXP_017437690.10.0PREDICTED: calmodulin-binding transcription activator 1-like isoform X1
TrEMBLA0A0L9TS210.0A0A0L9TS21_PHAAN; Uncharacterized protein
STRINGXP_007154445.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.11e-147ethylene induced calmodulin binding protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]