PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g06480.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 364aa    MW: 41278.5 Da    PI: 7.3415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g06480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-1767114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
   Vang10g06480.1  67 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 114
                      788*******************************************97 PP
2Myb_DNA-binding538.1e-17120164147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
   Vang10g06480.1 120 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 164
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-2559117IPR009057Homeodomain-like
PROSITE profilePS5129417.26462114IPR017930Myb domain
SuperFamilySSF466895.14E-3064161IPR009057Homeodomain-like
SMARTSM007171.9E-1266116IPR001005SANT/Myb domain
PfamPF002492.9E-1567114IPR001005SANT/Myb domain
CDDcd001674.16E-1170114No hitNo description
PROSITE profilePS5129425.712115169IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-25118169IPR009057Homeodomain-like
SMARTSM007171.9E-16119167IPR001005SANT/Myb domain
PfamPF002491.9E-15120164IPR001005SANT/Myb domain
CDDcd001671.39E-11122165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
LNVCRLGHVL LKGEEERESL TIAHKFDPGN RSHLGNKNIK EGKRRRQSKK PRNMGHHSCC  60
NQQKVKRGLW SPEEDEKLIR YITTHGYGCW SEVPEKAGLQ RCGKSCRLRW INYLRPDIRR  120
GRFTPEEEKL IISLHGVVGN RWAHIASHLP GRTDNEIKNY WNSWIKKKIR KTSLSSTIIA  180
QSIDHNSSQF SYSSNLLGHF SSNLDNPQTK PPFQETLFSS TCPLFMFDTP SLEGPATDCN  240
SVRPENFQDA VGLSTETWNL SHHQVQALPP LTVTVGLDTT NYLPPLIENV DNMVPIEVQR  300
CPMDEQGDIA LECLQRQGLN EWVETQQQCP NFLFWDSVEG HIGGEELATN VEANTLSPFP  360
SSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26671697108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g06480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440994.10.0PREDICTED: uncharacterized protein LOC108346423
TrEMBLA0A0L9VQ000.0A0A0L9VQ00_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QXH40.0A0A0S3QXH4_PHAAN; Uncharacterized protein
STRINGXP_007160103.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-101myb domain protein 103