PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang10g02540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 560aa MW: 62252.5 Da PI: 5.7011 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.7e-07 | 123 | 144 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck Gd C +aHg Vang10g02540.1 123 SACPDFRK-GSCKKGDACEYAHG 144 67******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.08 | 71 | 108 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 119 | 145 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.235 | 120 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 123 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-5 | 123 | 144 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.643 | 154 | 178 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 154 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MLGETNRANP TVHVPPWPLI HESSPEIFSP YTANADYSPY SLQEALSALQ HYDSTDAESD 60 SDVPSLESDV PVDAYSCDHF RMFEFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKYHY 120 SGSACPDFRK GSCKKGDACE YAHGVFECWL HPARYRTQPC KDGTSCRRRV CFFAHTPEQL 180 RVLPQQSPRS ADSYDGSPLR HAIESSKTAA PFVSSPGSLS PPVESPPMSP MTRSGSLSVN 240 EMVASLRNLQ LGKIKSLPSS WNVIGSPGFG SPRGPVIRPG FFSLPSTPTQ APVRGGVNYF 300 DLWEQSCEEE PVMERVESGR NIRARMFEKL SKENVLDGPG SGEPVVPDVG WVSELVIFKD 360 EHPKHLYSKL EMMQEGVENG WMVCEIRQSG YIENSDLEFV LMAGFACQGW QTRKGKAANY 420 HSCWIGIDAN VFPHHLFQRT WSPILSRAED RVFDHENSAE SRVLGLERTH IPVPSPLPLG 480 SNVSGLGSSC SVPLSNEVSV VSNSTSFAKQ ENQTQWFGYD DDIEGQNEAL LLDFVYEDLL 540 LSNGFVSQEK SSEIAPSFG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang10g02540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441381.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | Q9M0G2 | 1e-131 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A0L9VS03 | 0.0 | A0A0L9VS03_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QXA4 | 0.0 | A0A0S3QXA4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160259.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-131 | C3H family protein |
Publications ? help Back to Top | |||
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