PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g06970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 185aa MW: 19952.8 Da PI: 10.1857 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.2 | 2.9e-32 | 114 | 171 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs+fpr+YY+C++ gCp++k+ver+++dpk++++tYegeH+h Vang09g06970.1 114 DEYSWRKYGQKPIKGSPFPRGYYKCSTVkGCPARKHVERAQDDPKMLIVTYEGEHRHA 171 9************************9888****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.8E-14 | 72 | 110 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-33 | 100 | 173 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.512 | 107 | 173 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-27 | 110 | 173 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-38 | 112 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-28 | 114 | 170 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MVDPVPRTRM EEQLAIQEAA SADETLTLST TTTTSSSFLS SVTNDASVSD GKLGPFLPPS 60 AAKPPLSSSH RKKCRDAALS TKPSCHCSKK RKSRVKQSIR VPAISSKIAD IPPDEYSWRK 120 YGQKPIKGSP FPRGYYKCST VKGCPARKHV ERAQDDPKML IVTYEGEHRH ALPLPAATGG 180 GFGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-24 | 100 | 173 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 91 | RKKCRDAALSTKPSCHCSKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g06970.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019578 | 1e-133 | EU019578.1 Glycine max WRKY42 (WRKY42) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420707.1 | 1e-115 | PREDICTED: probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 1e-58 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A0L9UBE7 | 1e-114 | A0A0L9UBE7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RHI6 | 1e-114 | A0A0S3RHI6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138748.1 | 2e-88 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-52 | WRKY DNA-binding protein 11 |