PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g05150.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 375aa    MW: 43274.3 Da    PI: 7.6077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g05150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-131863146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
   Vang08g05150.1 18 KGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 63
                     79*************************8887799**********87 PP
2Myb_DNA-binding40.18.6e-1374113344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++ eE+ + +++ +q+G++ W++Ia+ +  gRt++++k++w
   Vang08g05150.1  74 KFSLEEERIVIELQAQFGNR-WAKIASFLS-GRTDNDVKNFW 113
                      799*****************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-211166IPR009057Homeodomain-like
PROSITE profilePS5129419.881369IPR017930Myb domain
SuperFamilySSF466891.21E-2716113IPR009057Homeodomain-like
SMARTSM007176.9E-111767IPR001005SANT/Myb domain
CDDcd001675.83E-112065No hitNo description
PfamPF139215.7E-122171No hitNo description
Gene3DG3DSA:1.10.10.603.9E-1767119IPR009057Homeodomain-like
PROSITE profilePS5129416.9670121IPR017930Myb domain
SMARTSM007172.6E-1271119IPR001005SANT/Myb domain
CDDcd001675.12E-1074113No hitNo description
PfamPF002496.3E-1174113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MHARKMHGKK EQEEYIRKGP WKAEEDEVLL NHVKKYGPRD WSSIRSKGLL QRTGKSCRLR  60
WVNKLRPNLK NGCKFSLEEE RIVIELQAQF GNRWAKIASF LSGRTDNDVK NFWSSRQKRL  120
ARILQTSGTT SKSQKNKTKV PTLLDVPTLE VIRWRGSSIS MLLYFYHNVF FFFYRISVDQ  180
SKKKMELKFE TLNQFQDLFV LLKMAPKFSS SSEGESSSKP QSYSLPLIEN SEVIKMVSLP  240
DLIKSELPSS DPIHVEQGFT PFESYNSSEQ IQQISFPQIP ELQHDLTFPM GSQDVLARID  300
EPYFVEDFCA LDDASEFGIG LQHPIGFPFF EPPGSCRIET RDTIDKFKSS DSFFDDFPMD  360
MFDHMDPPAS PSFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271611925126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g05150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515433.20.0transcription factor DUO1
TrEMBLA0A1S3VAQ90.0A0A1S3VAQ9_VIGRR; transcription factor DUO1
STRINGXP_007134506.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-69MYB family protein