PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g01470.1
Common NameLR48_Vigan11g034700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 279aa    MW: 31073 Da    PI: 8.0075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g01470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++++ Gg+ +W++ ++  g+ R++k+c++rw +yl
   Vang08g01470.1 14 KGPWTAEEDEILVNYINKNGGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 62
                     79*******************9***********99************97 PP
2Myb_DNA-binding47.73.5e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++l+++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
   Vang08g01470.1  68 RGSFTFEEEKLIIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-23565IPR009057Homeodomain-like
PROSITE profilePS5129415.045962IPR017930Myb domain
SuperFamilySSF466891.05E-2810109IPR009057Homeodomain-like
SMARTSM007172.8E-121364IPR001005SANT/Myb domain
PfamPF002498.5E-151462IPR001005SANT/Myb domain
CDDcd001675.91E-91662No hitNo description
PROSITE profilePS5129423.77563117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2566118IPR009057Homeodomain-like
SMARTSM007171.5E-1467115IPR001005SANT/Myb domain
PfamPF002493.1E-1468113IPR001005SANT/Myb domain
CDDcd001671.52E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRKPCCDKM GMKKGPWTAE EDEILVNYIN KNGGHGSWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGS FTFEEEKLII QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLICM  120
GLDPQTHQPL SSSCNPDGKA HAASTSTRHM AQWESARLEA EARLSREPYL FNNSNKTDSD  180
YFLRMWNSEV GQSFRGVHKS DNKGSCQSPI SLGSLSATTT TDLASNPTSI VKEDLMWGGS  240
KKIASDSSSS SELEEDSCDT SLQLLLDFPI NNDMSFLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141177108B-MYB
1h8a_C2e-271211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g01470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442408.10.0PREDICTED: myb-related protein Zm38-like
RefseqXP_017442409.10.0PREDICTED: myb-related protein Zm38-like
SwissprotQ9M2D91e-119MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0L9VRC80.0A0A0L9VRC8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SYT20.0A0A0S3SYT2_PHAAN; Uncharacterized protein
STRINGXP_007135039.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-112myb domain protein 17
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]