PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g08110.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26378.1 Da    PI: 9.5827
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g08110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.4e-213279249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +i  ks  qvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k + +
  Vang07g08110.1 32 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSF 79
                    57789999*********************************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-282382IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.6792383IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-252496IPR002100Transcription factor, MADS-box
CDDcd002651.84E-302497No hitNo description
PRINTSPR004041.1E-162545IPR002100Transcription factor, MADS-box
PfamPF003192.5E-233279IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-164560IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-166081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MFSNSRTPNR KHLQSMMKKK CSSGRQRIPI EKIPKKSHLQ VTFSKRRSGL FKKASELCTL  60
CGVEIAIIVF SPADKAFSFG HPQVESVVDS YVTSNSSPEY NRSGGGHQLV EAHRSANIRN  120
LNAQLTQIVN ELEMEKRRGE ELDRAWKTRQ SQFWWEIPVN ELGLQELQHL MFSLEELKNT  180
VAKYATQIMS MDQTTIGPTV TGPGPIGFTL GPYDAFDTKH ADIYANAPGL SFPY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g08110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406686.11e-163PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A0L9T8C51e-161A0A0L9T8C5_PHAAN; Uncharacterized protein
STRINGXP_007157187.11e-131(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-52AGAMOUS-like 61