PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g06500.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 303aa    MW: 34091.8 Da    PI: 5.4349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g06500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.4e-101449136
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     rg W++eEde+l+++++ +G g+W+ ++++ g++ t
   Vang07g06500.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLNHT 49
                     788****************************96665 PP
2Myb_DNA-binding27.95.5e-0966892347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W+ Ia++++ gRt++++k++w+++
   Vang07g06500.1 66 RWAHIASHLP-GRTDNEIKNYWNSW 89
                     5*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-13646IPR009057Homeodomain-like
PROSITE profilePS5129413.449994IPR017930Myb domain
SuperFamilySSF466899.56E-141186IPR009057Homeodomain-like
SMARTSM007171.6E-131392IPR001005SANT/Myb domain
PfamPF002497.5E-81449IPR001005SANT/Myb domain
CDDcd001673.23E-111790No hitNo description
Gene3DG3DSA:1.10.10.602.5E-1166100IPR009057Homeodomain-like
PfamPF002494.4E-76689IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLNHTS LYTLSTIFHY  60
DHCIFRWAHI ASHLPGRTDN EIKNYWNSWI KKKIRKPSVT SSITTTQSVD HHPQFNYSSN  120
QLDHFGNQDN VTTKPAVQET IFSSTCPLFM FDTSSLDHGT TTVDTTNVRA ELFQDSLGLS  180
SETWNLSHHQ VHHALPPQPA QAAATFTAAT VMDSTNYLPP LIENVENMVP NMEVQGCSID  240
EEGEMALECL RRQELNEWVE NQQHCPSFLF WDSVEGQLGG EELAPNTSNI GTNTLSPFPS  300
SL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g06500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407197.10.0PREDICTED: uncharacterized protein LOC108320319
TrEMBLA0A0L9T9R40.0A0A0L9T9R4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T6020.0A0A0S3T602_PHAAN; Uncharacterized protein
STRINGXP_007158529.11e-179(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-58myb domain protein 103