PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g01270.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 285aa    MW: 31182.1 Da    PI: 8.4015
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g01270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.92.2e-15200225126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tGtC+yGd C+FaHg
  Vang06g01270.1 200 FKTELCNKWQETGTCPYGDHCQFAHG 225
                     79***********************8 PP
2zf-CCCH18.73e-06238262125
                     --S---SGGGGTS.--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                     ykte Cr  ++ G  C+yG rC+F H
  Vang06g01270.1 238 YKTEVCRMVLA-GvVCPYGHRCHFRH 262
                     9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.3E-19195232IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-11196231IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004199227IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-12200225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-8233267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-11233266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803237265IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4237264IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MLNKDACSPS SNGGFGPAAV SGQLPSNGGY GSLYSALSND NLPSLSANCS NGGGVSLYPY  60
SDSTTQYDSC VIQKHQDMVN RQSMCLNRLV ETSKEVDALR QENGQLRAAN KELQKQLHLV  120
IQASLESQYA AAGSGSSGQT QPTLFDVERF SLPKSISVRS NGYLKMAQSA ALATNNNVTR  180
NKGQKEEEPL EMVVYNQGMF KTELCNKWQE TGTCPYGDHC QFAHGIGELR PVIRHPRYKT  240
EVCRMVLAGV VCPYGHRCHF RHALTEQEKA VVSQPKPRTM KLER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22200266470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g01270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497020.11e-146zinc finger CCCH domain-containing protein 15 isoform X1
RefseqXP_004497021.11e-146zinc finger CCCH domain-containing protein 15 isoform X2
SwissprotQ9C9F51e-70C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2Z6NFJ01e-148A0A2Z6NFJ0_TRISU; Uncharacterized protein
STRINGXP_004497020.11e-145(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.29e-73C3H family protein