PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g09490.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 280aa    MW: 31518.3 Da    PI: 8.3625
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g09490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY856.9e-27112171158
                     ---SS-EEEEEEE-.-TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKe.vkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                     ++Dgy+W+KYGqK+  k+++ pr+YY+C+ a +Cpvkkkv+rs +d+++v+ tYeg+Hnh
  Vang05g09490.1 112 VKDGYEWKKYGQKKtTKDNPSPRAYYKCALApTCPVKKKVQRSIQDKSIVVATYEGKHNH 171
                     58**********863699***********999**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036417.6E-12162IPR031100LOG family
SuperFamilySSF1024051.43E-11148No hitNo description
Gene3DG3DSA:3.40.50.4507.4E-16145No hitNo description
PROSITE profilePS5081123.881107174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-26108173IPR003657WRKY domain
SuperFamilySSF1182902.22E-22109174IPR003657WRKY domain
SMARTSM007743.5E-26112173IPR003657WRKY domain
PfamPF031061.6E-21113171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MHERKAVMAQ EADASVALPE GYETMEELWE MITWAQLGIH KNWLVEMLEA KVQHMKEQNR  60
TLRMMVEIMS KKCQKLQLHV QEINNAESEF STAQKASQIF VKIPPNDNSL IVKDGYEWKK  120
YGQKKTTKDN PSPRAYYKCA LAPTCPVKKK VQRSIQDKSI VVATYEGKHN HGFPFRDLFK  180
PSSATPEASI MDNDLPMTNI SNDINIDLCL CNRVPTDVTD KQHKDGGSNI KVLECVSSLL  240
KDPNFIKPLA EAVVLSINTQ SKQVGLNLSL GLPQPHLSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-201111741374WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g09490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420480.11e-176PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A0L9UGR21e-172A0A0L9UGR2_PHAAN; Uncharacterized protein
STRINGGLYMA06G23990.26e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.18e-38WRKY DNA-binding protein 40