PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g04300.1
Common NameLR48_Vigan04g236800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 559aa    MW: 61879.5 Da    PI: 6.651
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g04300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-084775151854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Vang05g04300.1 477 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 515
                     5887779******************************88 PP
2BELL74.61.6e-24349418171
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                     +rq+ ++kka+Ll ll+ Vd rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS  ++ L+++i++ 
  Vang05g04300.1 349 QRQAAESKKAQLLALLQLVDSRYSQCLDEIHTVVSAFHAATELDP-QIHAHFALQTISVLYKDLRERISNY 418
                     68999****************************************.**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.7E-24273417IPR006563POX domain
PfamPF075268.4E-27279416IPR006563POX domain
PROSITE profilePS5007111.078456519IPR001356Homeobox domain
CDDcd000864.52E-11459520No hitNo description
SMARTSM003896.9E-6459523IPR001356Homeobox domain
SuperFamilySSF466892.31E-15461528IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-26462525IPR009057Homeodomain-like
PfamPF059208.9E-15476515IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MYIAPLEISG RGATVIDEIS QHPTSNPLIQ CYSLDLNNQS HIINGISMLS GEQGEPTSNV  60
HADACFISPS TIADSTPLVT SRRKTIVGDA SNPMANSEFQ EHLVGGVPLT PASLAAILAD  120
RIGLEENLEN SAAALAPSIF STGALEVFFN NLHGTSNPWF GTFEECAYNE IPSKWNANKF  180
PKAPENDGTC QPYSSVANLD PNVWATSNVA NMANYAHYSS NFSKELSLSL ATSTAAGQCS  240
DVTCSNMTPC MNGTISCSSS REISMNLGGN KHAQISPEVL ESRYLLGIQE ILAQIARYSF  300
QNLEQLNYSA PGNRAGGHKS TSAFPPKRNI LTDHNASSVY ESHAESPLQR QAAESKKAQL  360
LALLQLVDSR YSQCLDEIHT VVSAFHAATE LDPQIHAHFA LQTISVLYKD LRERISNYIL  420
AMGSSFKKSC TEDSEWSIET SFLQKQWALQ QLKRKDQLWR PQRGLPERSV SVLRAWMFQN  480
FLHPYPKDAE KHLLAVKSGL TRSQVSNWFI NARVRLWKPM IEEMYAEMNK RKACRNEEEI  540
QNNHGNRISM SNQRFNVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14465523563Homeobox protein Meis2
3k2a_B2e-14465523563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g04300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422449.10.0PREDICTED: homeobox protein ATH1-like
SwissprotP487311e-104ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A0L9UGZ30.0A0A0L9UGZ3_PHAAN; Uncharacterized protein
STRINGXP_007136819.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-100homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]