PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g00410.1 | ||||||||
Common Name | LR48_Vigan04g255400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 159aa MW: 17306.4 Da PI: 6.4893 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.8e-13 | 14 | 58 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c+++ + Vang05g00410.1 14 KGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCQEKDN 58 79******************************99******98855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-16 | 5 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.016 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.95E-10 | 9 | 61 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-8 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-11 | 14 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.92E-9 | 16 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDDRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCQEKDNNV 60 LVEVKDSKSP TSERCPDLNL ELSISPPHHE REEGGDEEES KSIARSLCFA CSLGLQNSKD 120 CSCALNAITA NANASTATGY DFLGLKTNPL DYRTLQMK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g00410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-177 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420603.1 | 9e-59 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-32 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A0L9UI35 | 2e-57 | A0A0L9UI35_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R9U9 | 5e-57 | A0A0S3R9U9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007137351.1 | 8e-41 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-33 | myb domain protein 4 |
Publications ? help Back to Top | |||
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