PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g10540.1 | ||||||||
Common Name | LR48_Vigan03g122300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 25155.5 Da PI: 9.7068 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.9 | 3.8e-11 | 109 | 150 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa ++++a+ Vang04g10540.1 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 150 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-5 | 108 | 151 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-4 | 108 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-8 | 109 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-6 | 111 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MVSLRRRRLL GLCSGNSSFV TPLPLYCENL SSLENSTQQA KPKSEQPVLS DDASNLDSNT 60 AVLEEPGSSN VSGSSSSKEQ LIQPITGPPI KRRKRHRRKN LHNQEPCLMR GVYFKNMKWQ 120 AAIKVDKKQI HLGTVGSQEE AAHLYDRAAF MCGREPNFEL PEEEKRELSK FKWDDFLAMT 180 RQAITRKKHK RRLSPGPGNS HDMLPLPKDD WDSKQGVSED AE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 192 | RKKHKRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g10540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090935 | 1e-177 | BT090935.1 Soybean clone JCVI-FLGm-5P23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416170.1 | 1e-166 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
Swissprot | Q56XP9 | 2e-45 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A0L9U4Y1 | 1e-164 | A0A0L9U4Y1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007140664.1 | 1e-134 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5457 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 2e-47 | ERF family protein |
Publications ? help Back to Top | |||
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