PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g07160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 197aa MW: 22024.6 Da PI: 4.7935 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37.4 | 5.1e-12 | 50 | 89 | 22 | 59 |
EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 +Y+rCt++ gC+++k+v+r +edp + +++Y geH ++ Vang04g07160.1 50 MNYFRCTHRdqGCQATKQVQRVQEDPILYKTIYYGEHSCK 89 58******9999*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 6.6E-9 | 42 | 90 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-12 | 50 | 89 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-12 | 50 | 90 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.16E-11 | 51 | 89 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.166 | 51 | 87 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MDKLGGSTIR MKAIEELLRG RDSATQLRSV INGNGEDSPS AEKLVKEVLM NYFRCTHRDQ 60 GCQATKQVQR VQEDPILYKT IYYGEHSCKN MGNPEIILDM SPSSSSKFLS FNNSFSTQSQ 120 QECPFLSSSF PSSVKRECKE EIPPSTSSND YLISSGLTFD GSPRHVTLSS STPDSEYKAV 180 DFPDLYDVFE DLLEFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g07160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017408550.1 | 3e-96 | PREDICTED: probable WRKY transcription factor 70 isoform X2 | ||||
TrEMBL | A0A0S3RTJ6 | 3e-90 | A0A0S3RTJ6_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA18G44560.1 | 9e-65 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1995 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 2e-10 | WRKY DNA-binding protein 70 |