PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0459s00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 319aa    MW: 36249.9 Da    PI: 7.7478
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0459s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.32.3e-21151212159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy WrKYGqK+  ++++ rsYYrCt++   gC++ k+v+r ++ p +  +tY g+H+++
  Vang0459s00020.1 151 VEDGYVWRKYGQKMTLNAKYLRSYYRCTHKndqGCQAIKQVQRIQDVPPLYRTTYYGHHTCK 212
                       58***************************99999**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-23146212IPR003657WRKY domain
PROSITE profilePS5081118.67146214IPR003657WRKY domain
SuperFamilySSF1182903.92E-22148212IPR003657WRKY domain
SMARTSM007741.5E-33151213IPR003657WRKY domain
PfamPF031062.6E-22152212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MQRRRATLSN RLLCSQHEDS ILSSASISKK TNTLFLFPRS GPLQWEKNPL TYEEEGSKSV  60
LPFVEDLVRK VLCSFTNTLL LLNSTNDVSH ELVASITLRD VFSSTTTSPK KLESVDETCK  120
NRSILTTQNP RRGYKRKSIA PSWEKDSSIL VEDGYVWRKY GQKMTLNAKY LRSYYRCTHK  180
NDQGCQAIKQ VQRIQDVPPL YRTTYYGHHT CKSRMNSEIV LEPLSPSASS TLLSFNSSFH  240
CKQENPFPSS LLASTKHELV EVIHDEHSPQ NQLSSLEDLL LHDCEVDCDY SRRVASMLSS  300
AESVEFENVF MSSLDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18151212869OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136RRGYKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0459s00020.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423514.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A0S3SIN50.0A0A0S3SIN5_PHAAN; Uncharacterized protein
STRINGXP_007149558.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-27WRKY DNA-binding protein 70