PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0459s00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 319aa MW: 36249.9 Da PI: 7.7478 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.3 | 2.3e-21 | 151 | 212 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy WrKYGqK+ ++++ rsYYrCt++ gC++ k+v+r ++ p + +tY g+H+++ Vang0459s00020.1 151 VEDGYVWRKYGQKMTLNAKYLRSYYRCTHKndqGCQAIKQVQRIQDVPPLYRTTYYGHHTCK 212 58***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-23 | 146 | 212 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.67 | 146 | 214 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-22 | 148 | 212 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-33 | 151 | 213 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-22 | 152 | 212 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MQRRRATLSN RLLCSQHEDS ILSSASISKK TNTLFLFPRS GPLQWEKNPL TYEEEGSKSV 60 LPFVEDLVRK VLCSFTNTLL LLNSTNDVSH ELVASITLRD VFSSTTTSPK KLESVDETCK 120 NRSILTTQNP RRGYKRKSIA PSWEKDSSIL VEDGYVWRKY GQKMTLNAKY LRSYYRCTHK 180 NDQGCQAIKQ VQRIQDVPPL YRTTYYGHHT CKSRMNSEIV LEPLSPSASS TLLSFNSSFH 240 CKQENPFPSS LLASTKHELV EVIHDEHSPQ NQLSSLEDLL LHDCEVDCDY SRRVASMLSS 300 AESVEFENVF MSSLDFVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-18 | 151 | 212 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | RRGYKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0459s00020.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017423514.1 | 0.0 | PREDICTED: probable WRKY transcription factor 70 | ||||
TrEMBL | A0A0S3SIN5 | 0.0 | A0A0S3SIN5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007149558.1 | 1e-152 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12638 | 11 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 7e-27 | WRKY DNA-binding protein 70 |