PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g05010.1 | ||||||||
Common Name | LR48_Vigan09g253600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 455aa MW: 49149.3 Da PI: 4.9205 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.3e-05 | 344 | 381 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Vang03g05010.1 344 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 381 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.973 | 332 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.59E-6 | 342 | 386 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-11 | 342 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-8 | 346 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MAEEFQAAIC GESWWNINST RSVFPLISST CSVAAADAGN YSTWQSTDFV DLKGTRSCAE 60 DINNFISSDN SLSFLDVEKP QLRDSAGGTG SILTDSTLQM IGFGMSSSAS SNWNQSLLGS 120 DFHSVLQGET GMDGDLPKNF SSAGGQGSTV DAFKSMNQEF SLDQQSLNSV VTSTGSLSGG 180 FPVVSASYGY PSTLIQGLYD PEPQPQPQNS LFTNPPMSYS SSTANYGTCS NELSPTWSKI 240 SSLLKPSTPK QQLSGLHFSN DTSFWNGSAE ALHDIRAGVF ASSQAQYQTP KFEEKSNSSN 300 TRLNKLKREE SPDAISSAKK NSSEPAFKRQ RIETPSPLPT FKVRKEKLGD RITALQQLVS 360 PFGKTDTASV LHEAIEYIKF LHDQVSVLST PYIKNGAPIQ HQQDCDNLKE SEGRKEDLRS 420 RGLCLVPISS TFPVANESSV DFWTPTFGGA VIGR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g05010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031120 | 0.0 | KT031120.1 Glycine max clone HN_CCL_146 bHLH transcription factor (Glyma13g32320.2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435141.1 | 0.0 | PREDICTED: transcription factor bHLH112 isoform X1 | ||||
TrEMBL | A0A0L9VG21 | 0.0 | A0A0L9VG21_PHAAN; Uncharacterized protein | ||||
STRING | XP_007148280.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 7e-68 | bHLH family protein |
Publications ? help Back to Top | |||
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