PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g01050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 300aa MW: 34378.1 Da PI: 7.9868 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.9 | 6.2e-22 | 68 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk + +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Vang03g01050.1 68 EYYGNFARKNGFSIRKERSRISPQLG-IYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHELL 159 59********************8888.********************9**********************99877789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.6E-20 | 68 | 159 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MTSIPSKNLC VRRQQCPCGD WKCYITYEGD SEEGSAAPEM VKEEKASSGA MITPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRISP QLGIYKRDFV CYRSGFAPVK KKPNGEHHRD 120 RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKMLEQ EKGIQGGQLP FLERDVRNFV QNRKKVVLEN EALLSVGGEW 240 FQEYQSLAET LFQESSITKE RSDYVRKELT KELNRILNEV RNLPEADGVC MNMSVSPAN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g01050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434177.1 | 1e-171 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_017434178.1 | 1e-171 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 1e-104 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A1S3VLA3 | 1e-168 | A0A1S3VLA3_VIGRR; Uncharacterized protein | ||||
TrEMBL | A0A1S3VLH9 | 1e-169 | A0A1S3VLH9_VIGRR; Uncharacterized protein | ||||
TrEMBL | A0A1S3VM30 | 1e-169 | A0A1S3VM30_VIGRR; Uncharacterized protein | ||||
STRING | XP_007147626.1 | 1e-169 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 1e-107 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
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