PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g08260.1

Common Name

LR48_Vigan01g063200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 272aa MW: 29296.6 Da PI: 8.2789

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g08260.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.1	1.1e-34	2	54	7	59
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 kcprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ Vang02g08260.1 2 KCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKR 54 8*********************************************9976554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-17	1	43	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.465	1	55	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-31	2	53	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	3	39	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
LKCPRCDSTN TKFCYYNNYN KSQPRHFCRA CKRHWTKGGT LRNVPVGGGR KNKRVKKPNT 60 PTPSSTTATT TPTTASPSTC TATVTTSIGN MDALLGSSHM TIQTPLADDQ KHMASSLYQA 120 LIRPPPLLLQ QNLMNARDLD GKDFGIGIGI GIGNNGIFPS STLPLPHQSQ SLLFPFSTSS 180 SSFDTNPCSV STSLRSSNVY NYGEEFKAAE ESTINSTSIA PSTGGTNTQP WEIAATSGVG 240 LGTSNFWNWE DFDSLVSTDL KDPWDDSDIK P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g08260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017421950.1	0.0	PREDICTED: dof zinc finger protein DOF3.4-like
TrEMBL	A0A0L9TKW8	0.0	A0A0L9TKW8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3QZM4	0.0	A0A0S3QZM4_PHAAN; Uncharacterized protein
STRING	XP_007159297.1	1e-163	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	3e-23	Dof family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]