PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0236s00370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 387aa MW: 42205.2 Da PI: 10.0656 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.1e-09 | 235 | 279 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Vang0236s00370.1 235 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 279 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-15 | 228 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.12 | 230 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 232 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-7 | 235 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-11 | 236 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
LGVNTKNRAP LEEKKKERKE KLFCKQDKDT RTHCAKWEAN YPVEKKKAQL SKCKTKKQNQ 60 TKPFSLSASC RFSLPNSFTR FNLDSSRFKL KLLLMANNPS DAPADDFLEQ ILGLPTFASG 120 DSGLSAADVG LSGTTSPAPM MLQLNSADAN AHLTGAAFHA PVYQLGLSLD QGKGGFMKPE 180 EASASGKRYR DDVVDGRAKN VFHGQPMPST MPTAPHPPAI RPRVRARRGQ ATDPHSIAER 240 LRRERIAERI RALQELVPSV NKTDRAAMLD EIVDYVKFLR LQVKVLSMSR LGGAGAVAPL 300 VTDIPLSSVE EEGGEGARNR PAWDKLSNDG TERQVAKLME ENVGAAMQFL QSKALCIMPI 360 SLASAIYQSQ PPDSSSIVKP ETNPPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 244 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0236s00370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017442969.1 | 0.0 | PREDICTED: transcription factor UNE12 | ||||
Swissprot | O22768 | 1e-130 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A0L9T462 | 0.0 | A0A0L9T462_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RY21 | 0.0 | A0A0S3RY21_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA19G34360.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5449 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 1e-110 | bHLH family protein |
Publications ? help Back to Top | |||
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