PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0229s00220.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 405aa    MW: 45962.4 Da    PI: 9.3523
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0229s00220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.1e-19184230148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEd  lv++v+q+G++ W+ Ia+ m  gR +kqc++rw+++l
  Vang0229s00220.1 184 KGQWTPEEDSALVELVNQFGPKKWSEIAKLMC-GRVGKQCRERWHNHL 230
                       799*****************************.*************97 PP
2Myb_DNA-binding56.94.9e-18236278145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       + +W+ eEd +l++a++++G++ W+ Ia++++ gRt++++k++w+
  Vang0229s00220.1 236 KESWSLEEDMILIKAHQEFGNR-WSEIAKRLP-GRTENSIKNHWN 278
                       578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.485179234IPR017930Myb domain
SuperFamilySSF466892.62E-32181277IPR009057Homeodomain-like
SMARTSM007171.1E-16183232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-27185237IPR009057Homeodomain-like
CDDcd001673.84E-16187230No hitNo description
PfamPF139211.2E-17187244No hitNo description
PROSITE profilePS5129421.757235285IPR017930Myb domain
SMARTSM007171.6E-17235283IPR001005SANT/Myb domain
CDDcd001678.88E-15238278No hitNo description
Gene3DG3DSA:1.10.10.601.6E-22238283IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEFDPCFQGP QYLSSICPKI PYLNPHAQYM FPSQSSIFIP PSQPIMFNPN HVFHHFQDHI  60
VNVPPFVMDG SNPIVTPMYG NGIPTPSFGD GSFANINSHQ PVMLVPKNNS KIEALYDDHK  120
GKVIWDFSQK TMVHPFEASS PNSPSPFCLS NEYGLGMSEF HRDTDRRMVE VENNTHNATD  180
NIIKGQWTPE EDSALVELVN QFGPKKWSEI AKLMCGRVGK QCRERWHNHL RPNIRKESWS  240
LEEDMILIKA HQEFGNRWSE IAKRLPGRTE NSIKNHWNGT KRRQSCRSYN GSKKNPYEGS  300
MLRAYVKRVT AMEESTKVLK KATSKKNKNG LATLFRCTNE MFIGNSSNYA PLQVKSNNIG  360
VSYGAIGTNA INRGMNPINI SYAGMSFYAV IYLPDFAFLL VLMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-451822842104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-451822842104C-Myb DNA-Binding Domain
1msf_C1e-451822842104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0229s00220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441244.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A0L9VU200.0A0A0L9VU20_PHAAN; Uncharacterized protein
STRINGGLYMA03G15930.21e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143361018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-55myb domain protein 118