PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g17940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TALE | ||||||||
Protein Properties | Length: 571aa MW: 63030.7 Da PI: 6.8575 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.4e-09 | 489 | 527 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + Vang01g17940.1 489 MFQNflHPYPKDAEKHSLAVKSGLTRSQVSNWFINARVR 527 5887779******************************88 PP | |||||||
2 | BELL | 61.4 | 2e-20 | 360 | 428 | 1 | 70 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 er++ + k++Ll ll+ V++ Y+q+ ++++tv+s+F+a+++l++ ++++++Al++iS ++ L+++i++ Vang01g17940.1 360 ERHAADSNKSQLLMLLQLVENGYSQCLDEVHTVASAFHAATELDP-HMHAHFALQTISLLYKDLRERISN 428 6889999**************************************.**********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.7E-14 | 283 | 428 | IPR006563 | POX domain |
Pfam | PF07526 | 2.7E-23 | 289 | 427 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.321 | 468 | 531 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.47E-11 | 471 | 532 | No hit | No description |
SMART | SM00389 | 2.0E-6 | 471 | 535 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-15 | 473 | 540 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-26 | 474 | 537 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.0E-15 | 488 | 527 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MENNMYSASL DIAGRNSAVI EEIAQHLAPK PLIQCYSFDL NNQNHIINGI PVLAAEQGEP 60 RSDVHVDGCF INPARIADSN SFVSIQGKSI VGDASNPINN SAIQEHLAGG RPIASAASLA 120 DRIGLQENLQ SSAALPHSMS SLEALGPYIF NNWQDTSNPL AATFGDHAYD ELSSIQKWNV 180 NKFLKAPEAN GTEIQAYSSI GNLVQNGWTS SNVASLGNFA YNSSNCSKEL SLSLSRSPPT 240 TGQCSEMSCS NASRSMNGRS SGLEQPSCSS KELCMRLGSN KHVQFSPAIL GSRYLAGVQE 300 IFAQIATYSF ENVELMNYPA SGVRAGGNKS ASAFIPKRRV ASNQNENSMY GAHAEESPSE 360 RHAADSNKSQ LLMLLQLVEN GYSQCLDEVH TVASAFHAAT ELDPHMHAHF ALQTISLLYK 420 DLRERISNCI RAMGPDFNSL CSEEEKEWSL ETSFIQKQWA LQQLKKKDQL WRPQRGLPER 480 SVSVLRAWMF QNFLHPYPKD AEKHSLAVKS GLTRSQVSNW FINARVRLWK PMIEEMYAEM 540 SRRKACRNEE GLESTHRSRM SMNSQMLNIN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-15 | 477 | 535 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-15 | 477 | 535 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g17940.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017428422.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_017428423.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_017428424.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_017428425.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_017428426.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Swissprot | P48731 | 8e-96 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A0S3RPM4 | 0.0 | A0A0S3RPM4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007160994.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5939 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 2e-88 | homeobox gene 1 |
Publications ? help Back to Top | |||
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