PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g17940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 571aa    MW: 63030.7 Da    PI: 6.8575
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g17940.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.4e-094895271854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Vang01g17940.1 489 MFQNflHPYPKDAEKHSLAVKSGLTRSQVSNWFINARVR 527
                     5887779******************************88 PP

2BELL61.42e-20360428170
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                     er++  + k++Ll ll+ V++ Y+q+ ++++tv+s+F+a+++l++ ++++++Al++iS  ++ L+++i++
  Vang01g17940.1 360 ERHAADSNKSQLLMLLQLVENGYSQCLDEVHTVASAFHAATELDP-HMHAHFALQTISLLYKDLRERISN 428
                     6889999**************************************.**********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.7E-14283428IPR006563POX domain
PfamPF075262.7E-23289427IPR006563POX domain
PROSITE profilePS5007111.321468531IPR001356Homeobox domain
CDDcd000864.47E-11471532No hitNo description
SMARTSM003892.0E-6471535IPR001356Homeobox domain
SuperFamilySSF466891.92E-15473540IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-26474537IPR009057Homeodomain-like
PfamPF059202.0E-15488527IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MENNMYSASL DIAGRNSAVI EEIAQHLAPK PLIQCYSFDL NNQNHIINGI PVLAAEQGEP  60
RSDVHVDGCF INPARIADSN SFVSIQGKSI VGDASNPINN SAIQEHLAGG RPIASAASLA  120
DRIGLQENLQ SSAALPHSMS SLEALGPYIF NNWQDTSNPL AATFGDHAYD ELSSIQKWNV  180
NKFLKAPEAN GTEIQAYSSI GNLVQNGWTS SNVASLGNFA YNSSNCSKEL SLSLSRSPPT  240
TGQCSEMSCS NASRSMNGRS SGLEQPSCSS KELCMRLGSN KHVQFSPAIL GSRYLAGVQE  300
IFAQIATYSF ENVELMNYPA SGVRAGGNKS ASAFIPKRRV ASNQNENSMY GAHAEESPSE  360
RHAADSNKSQ LLMLLQLVEN GYSQCLDEVH TVASAFHAAT ELDPHMHAHF ALQTISLLYK  420
DLRERISNCI RAMGPDFNSL CSEEEKEWSL ETSFIQKQWA LQQLKKKDQL WRPQRGLPER  480
SVSVLRAWMF QNFLHPYPKD AEKHSLAVKS GLTRSQVSNW FINARVRLWK PMIEEMYAEM  540
SRRKACRNEE GLESTHRSRM SMNSQMLNIN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-15477535563Homeobox protein Meis2
3k2a_B6e-15477535563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g17940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428422.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_017428423.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_017428424.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_017428425.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_017428426.10.0PREDICTED: homeobox protein ATH1-like
SwissprotP487318e-96ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A0S3RPM40.0A0A0S3RPM4_PHAAN; Uncharacterized protein
STRINGXP_007160994.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-88homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]