PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang01g05260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 423aa MW: 47006 Da PI: 8.4703 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Vang01g05260.1 60 RERWTDEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 104 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.03E-17 | 54 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.885 | 55 | 109 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.0E-16 | 58 | 107 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.7E-13 | 59 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-9 | 60 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-13 | 60 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.23E-10 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 423 aa Download sequence Send to blast |
MAIQGKNAFT RSRGGPPIGD EICLSPGVHS VADISLHDQF SCGNDYALKV RKPYTITKQR 60 ERWTDEEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKIVR ETSGNSTALE 120 ESIEIPPPRP KRKPIHPYPR KLIEIPKKEI FNSEHPLRSI SLKSSDFGQE NNSPKSVLST 180 VVSENLGSSD SDTPTGSLSP VSSISGVLTN RFPLAQPKTS FEEEGSLPSS AHDEQHLVKL 240 KLFHKETVST KDDAAEESCG RTLKLFGTTL LVTDTSKPFS LITEPFKPIP AAVTYLMQLQ 300 NGCSDLAESP ASIVPRWTFS HNALSVPLHR ELKGKHLYSN LGDFEHKEVQ KEGSWTGSNT 360 SSVNDGDNTA PSETSGIFEL RVRAKTCGKG FVPYKRCMAE RENKYSSVCD EEREEQRVKP 420 SL* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang01g05260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017431210.1 | 0.0 | PREDICTED: protein REVEILLE 1 | ||||
TrEMBL | A0A0S3RL94 | 0.0 | A0A0S3RL94_PHAAN; Uncharacterized protein | ||||
STRING | XP_007141962.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17300.1 | 1e-63 | MYB_related family protein |