PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0164s00420.1 | ||||||||
Common Name | LR48_Vigan03g190400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GATA | ||||||||
Protein Properties | Length: 203aa MW: 22566.8 Da PI: 9.1295 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55 | 1.1e-17 | 129 | 163 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + Tp+WR gp g+ktLCnaCG++y++ +l Vang0164s00420.1 129 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 163 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.451 | 123 | 159 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.1E-14 | 123 | 177 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-15 | 125 | 187 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.8E-14 | 127 | 161 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.64E-12 | 128 | 175 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 129 | 154 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-15 | 129 | 163 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
LMNMNMCQSV SVTTECHQEQ VFAPSCSSSL DDLFSAQNTN FAVPGKARSK RKRLSAPRTK 60 DPLSIWSQHL NPQNEALSSD PPLLKQAYWL ADSELMMPKA KEEQEVRKVV IGECEVEGSS 120 GQQAMARRCS HCLAQRTPQW RAGPLGPKTL CNACGVRYKS GRLLPEYRPA KSPTFVSYLH 180 SNSHKKVMEM RMSVYSSISS DL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0164s00420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417526.1 | 1e-118 | PREDICTED: GATA transcription factor 9-like | ||||
TrEMBL | A0A0L9U798 | 1e-116 | A0A0L9U798_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RWU7 | 1e-116 | A0A0S3RWU7_PHAAN; Uncharacterized protein | ||||
STRING | XP_007161927.1 | 1e-115 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 3e-44 | GATA transcription factor 9 |
Publications ? help Back to Top | |||
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