PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0084s00540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 255aa MW: 28884.4 Da PI: 6.595 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.6 | 1.8e-12 | 118 | 143 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Vang0084s00540.1 118 YQPDICKDYKETGYCGYGDSCKFMHD 143 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.31E-9 | 116 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 117 | 144 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 117 | 145 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-10 | 118 | 143 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-12 | 118 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 2.1E-13 | 182 | 236 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 5.9E-9 | 194 | 236 | No hit | No description |
SuperFamily | SSF57850 | 4.35E-13 | 194 | 237 | No hit | No description |
SMART | SM00184 | 1.7E-4 | 195 | 232 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 10.453 | 195 | 233 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 2.06E-7 | 195 | 236 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 210 | 219 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
SVSAEPSEES GKPVFQFESS KEIQVQHDSK ATATLETETE FSKDARAIRE RAXKQASESL 60 KGKSXRPEDE KLYKGMNSYK DYKAGFRREQ TIASEKAGGA HGPLRASAHI RVSARFDYQP 120 DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQLEKEWEEA EKARKMRLAA GEXADEEEGA 180 NLNDEDDEDS LPFACFICRN PFADPVVTKC KHYFCEHCAL KHHAKNKKCF VCNQPTLGIF 240 NVAHEIRRKM AEDK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 2e-67 | 28 | 250 | 113 | 317 | RING finger protein 113A |
5z58_M | 2e-67 | 28 | 250 | 113 | 317 | RING finger protein 113A |
6ff4_t | 2e-67 | 28 | 250 | 113 | 317 | RING finger protein 113A |
6ff7_t | 2e-67 | 28 | 250 | 113 | 317 | RING finger protein 113A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0084s00540.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. | |||
GenBank | AP015321 | 0.0 | AP015321.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0277, complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017410638.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Refseq | XP_017410639.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Refseq | XP_017410640.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Refseq | XP_017410641.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Refseq | XP_017410642.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Swissprot | Q8GX84 | 1e-135 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q9FNG6 | 1e-134 | C3H51_ARATH; Zinc finger CCCH domain-containing protein 51 | ||||
TrEMBL | A0A0S3SXT7 | 0.0 | A0A0S3SXT7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SY18 | 0.0 | A0A0S3SY18_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3TE13 | 0.0 | A0A0S3TE13_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134882.1 | 1e-179 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7082 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-127 | C3H family protein |