PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0058ss00800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 289aa    MW: 32393.4 Da    PI: 8.6996
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0058ss00800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.74.1e-28124211291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        fYn+YA++vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+ +eH+H+l+p
  Vang0058ss00800.1 124 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFIQEHTHPLTP 211
                        ******************************************9988..9**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-25124211IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MNLLSLHGTQ KHKSKFSHSR SLPTTIEFAS ASILMEFGID GSINGETVGN VTLGQINSCS  60
TPDENKVGCS SFNPAYKHDH DDNITQDSSG GDTIPSGIPA VSVVSADEPY VGQEFDSEAA  120
AHAFYNAYAT RVGFIIRVSK LSRSRRDGSA IGRALVCNRE GYRMPDKREK IVRQRAETRV  180
GCRAMILVRK VSSGKWVVTK FIQEHTHPLT PGKGRRDCIY EQYPNEHDKI RELSQQLAIE  240
KKRSATYKRH LELIFEHIEE HNESLSKKIQ HIVDSVKEME TKEQQSHR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0058ss00800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521908.20.0protein FAR1-RELATED SEQUENCE 12
RefseqXP_027926454.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A0S3SFZ50.0A0A0S3SFZ5_PHAAN; Uncharacterized protein
STRINGXP_007150433.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-88FAR1 family protein