PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0058ss00800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 289aa MW: 32393.4 Da PI: 8.6996 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.7 | 4.1e-28 | 124 | 211 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+ +eH+H+l+p Vang0058ss00800.1 124 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFIQEHTHPLTP 211 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-25 | 124 | 211 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MNLLSLHGTQ KHKSKFSHSR SLPTTIEFAS ASILMEFGID GSINGETVGN VTLGQINSCS 60 TPDENKVGCS SFNPAYKHDH DDNITQDSSG GDTIPSGIPA VSVVSADEPY VGQEFDSEAA 120 AHAFYNAYAT RVGFIIRVSK LSRSRRDGSA IGRALVCNRE GYRMPDKREK IVRQRAETRV 180 GCRAMILVRK VSSGKWVVTK FIQEHTHPLT PGKGRRDCIY EQYPNEHDKI RELSQQLAIE 240 KKRSATYKRH LELIFEHIEE HNESLSKKIQ HIVDSVKEME TKEQQSHR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0058ss00800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521908.2 | 0.0 | protein FAR1-RELATED SEQUENCE 12 | ||||
Refseq | XP_027926454.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
TrEMBL | A0A0S3SFZ5 | 0.0 | A0A0S3SFZ5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150433.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-88 | FAR1 family protein |