PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss04630.1
Common NameLR48_Vigan05g004000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 79aa    MW: 8943.24 Da    PI: 10.6215
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss04630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.23.6e-121779159
           trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnk 59
                       +W++  v +L+ea++ ++   +r+klk+++We+v+k++     +++  ++++qCk+k+e+++k
  Vang0022ss04630.1 17 EWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVssraNSTKSPKTQTQCKNKIESMKK 79
                       5*************************************88777778889999*******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-41273IPR009057Homeodomain-like
PfamPF138376.6E-141579No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MIKKAIGGGS DRLKRDEWSE GAVSTLLEAY EAKWVLRNRA KLKGHDWEDV AKHVSSRANS  60
TKSPKTQTQC KNKIESMKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss04630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-125AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148925.13e-48hypothetical protein PHAVU_005G025700g
RefseqXP_017423867.13e-48PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_017423868.13e-48PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0L9UIB27e-47A0A0L9UIB2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SKL07e-47A0A0S3SKL0_PHAAN; Uncharacterized protein
TrEMBLV7BSI07e-47V7BSI0_PHAVU; Uncharacterized protein
STRINGXP_007148925.11e-47(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-42sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]