PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss03200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 256aa    MW: 28836.3 Da    PI: 5.6932
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss03200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.74.6e-2991178291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        fYn+YA++vGF vr+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a+++v+k ++gkw+vtkl++eH+H+l+p
  Vang0010ss03200.1  91 FYNAYATDVGFIVRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMIMVRKVSSGKWVVTKLVKEHTHPLTP 178
                        ******************************************9988..9**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-2691178IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDSFVAAVEF EIDGTGETVA NAAIDEISSV ADDNREGESI EPNYKQDEGD NLAQDSSGIT  60
IPFAIPTVSV VAVEEPYVGQ EFESESAAQA FYNAYATDVG FIVRVSKLSR SRRDGTAIGR  120
ALVCNKEGFR MPDKREKIVR QRAETRVGCR AMIMVRKVSS GKWVVTKLVK EHTHPLTPGK  180
GRRDFVYEQY PNEHDKIREL SQQLACEKKR SATYKRHLEL IFEHIEEHNE SLSKKIQHIV  240
DSVREMETKE QQSQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss03200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431505.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A1S3THZ71e-178A0A1S3THZ7_VIGRR; protein FAR1-RELATED SEQUENCE 7
STRINGXP_007131945.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.28e-96FAR1 family protein