PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0010ss03200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | FAR1 | ||||||||
Protein Properties | Length: 256aa MW: 28836.3 Da PI: 5.6932 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.7 | 4.6e-29 | 91 | 178 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF vr+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a+++v+k ++gkw+vtkl++eH+H+l+p Vang0010ss03200.1 91 FYNAYATDVGFIVRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMIMVRKVSSGKWVVTKLVKEHTHPLTP 178 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.2E-26 | 91 | 178 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDSFVAAVEF EIDGTGETVA NAAIDEISSV ADDNREGESI EPNYKQDEGD NLAQDSSGIT 60 IPFAIPTVSV VAVEEPYVGQ EFESESAAQA FYNAYATDVG FIVRVSKLSR SRRDGTAIGR 120 ALVCNKEGFR MPDKREKIVR QRAETRVGCR AMIMVRKVSS GKWVVTKLVK EHTHPLTPGK 180 GRRDFVYEQY PNEHDKIREL SQQLACEKKR SATYKRHLEL IFEHIEEHNE SLSKKIQHIV 240 DSVREMETKE QQSQL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0010ss03200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017431505.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A1S3THZ7 | 1e-178 | A0A1S3THZ7_VIGRR; protein FAR1-RELATED SEQUENCE 7 | ||||
STRING | XP_007131945.1 | 1e-165 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 8e-96 | FAR1 family protein |