PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0010ss01910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 27187.8 Da PI: 6.8558 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.7 | 1.7e-42 | 79 | 178 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a Vang0010ss01910.1 79 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQA 170 7******************************************************************************************* PP DUF260 93 elallkee 100 +la+ ++e Vang0010ss01910.1 171 QLAKSQAE 178 ***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.379 | 78 | 179 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-42 | 79 | 176 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
PSHKHTLFFF LSFFVSLKHD TTREQKHTKE QTNKQTRLET EMESSDTYTP TSSAPLSHSP 60 TSSSSSPPPP PPPTVVMSPC AACKILRRRC AEKCVLAPYF PPTEPAKFTI AHRVFGASNI 120 IKFLQELPES QRADAVTSMV YEASARIRDP VYGCAGAICQ LQKQVNELQA QLAKSQAELV 180 TMQLQQANLV ALICMEMAQS PQESPQQSVD NFISTPPHTG GYQSGVNNFF EENTSPNSLW 240 EPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-41 | 78 | 180 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-41 | 78 | 180 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0010ss01910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432444.1 | 1e-149 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 4e-76 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A0L9V6W4 | 1e-148 | A0A0L9V6W4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SCU3 | 1e-148 | A0A0S3SCU3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132174.1 | 1e-119 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 5e-78 | LOB domain-containing protein 11 |