PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0010ss00260.1 | ||||||||
Common Name | LR48_Vigan08g176100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | DBB | ||||||||
Protein Properties | Length: 288aa MW: 31833.5 Da PI: 6.9218 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.8 | 9.4e-08 | 4 | 43 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvv 40 C+ ++++ +++fC ++ lC+ C ++H+ H+++ Vang0010ss00260.1 4 QCDVCHKEVASFFCPADEAALCHACDRTIHHAnklaHKHK 43 7****************************64559995543 PP | |||||||
2 | zf-B_box | 28.4 | 3.5e-09 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38 + C+ ++ek++ fC++++ llC++C +++H + Ht Vang0010ss00260.1 56 TLCDICHEKRAYVFCREDRALLCRQCDVSIH-DvneHT 92 68****************************9.435576 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.192 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.44E-7 | 3 | 33 | No hit | No description |
Pfam | PF00643 | 2.9E-5 | 4 | 45 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.4E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.926 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.7E-13 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.95E-9 | 56 | 99 | No hit | No description |
Pfam | PF00643 | 4.1E-7 | 56 | 92 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MKIQCDVCHK EVASFFCPAD EAALCHACDR TIHHANKLAH KHKRLSLSHP TSIAATLCDI 60 CHEKRAYVFC REDRALLCRQ CDVSIHDVNE HTKTHDRFLF TGITLEEKTR TTSTSSTSNP 120 AQSSLSKENI DSFGSSRTLN NSSSVLTGIT LEEKTRTTST SSTSNENIDP FGSSRTVYNS 180 NSVSTSSLSE YLIQTIPGYC MEDLLDASFA ASNAFSKDYE FPNEDVQVSM CSIPLQTQFN 240 TASNVYPEMP KAKAGEGYSD WIHNSDSAAY KVPSITSPLV KKIKRFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0010ss00260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432732.1 | 0.0 | PREDICTED: B-box zinc finger protein 20-like | ||||
TrEMBL | A0A0L9V8E6 | 0.0 | A0A0L9V8E6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SDT0 | 0.0 | A0A0S3SDT0_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA11G12060.1 | 1e-108 | (Glycine max) | ||||
STRING | XP_007131777.1 | 1e-108 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-44 | salt tolerance homolog2 |
Publications ? help Back to Top | |||
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